Non-Coding RNA Search

Ss1.1-Pig4-TMW8046N18.5

Sequence:


               
               TGAGTATGAATCCAGTTGCAGCAGCTCCACTCTCAGTATTTACTAAAGAATCTACGTCCT
CCAAACACAGCGACCACCATCACCACCATCACCACGAGCACAAGAAGAAGAAGAAGAAGC
ACAAACATAAGCATAAGCACAAGCATAAGCACGACAGTAAAGAAAAGGACAAGGAGCCTT
TCACTTTCTCCAGCCCTGCCAGCGGCAGGTCTATTCGTTCTCCTTCTCTTTCAGATTGAG
AAGGGGCACCAGAGACCTTTTCCTGAGTGTCCAGAAGAAAATACAAAATCAGAGCTTCGT
CCTCCTCTCTAAAGAATGAAGAAAGGGAAGAAACAACAGCAAAAACTAGTTGCCTCTCTC
ATAGAGACTCAAGTTCTAAATATTTGATTTACATTATTTATACAATTGAAATCTAATTAG
GAAAAGGTGTTTTATAGTTCTGAGGAAACCATTTCATCCCATTTCCTCCTTAAAACACAC
ACAGAGCAAACCCTTTCATAAGGCCCTCCTATCCACTGGCAGCCCCCATTCACATCATGG
TCTCCATGTGTACTGCCAAAGTCAATTATGTCTTAAAGCCTTTGATGGATGTTACGGGGC
AAAGTTATGCTTTAAACAGAAGCTACTGCCAAATCTGTGGTGAAAGCACTATTTCCAGTG
AAATACTGAATAACACCATTTGGAATTACTGAAAACAAAGGCTTTTCTATAGGAGTCTTC
TCCATTGCATGTTTTTTTGTTTGTTAGCCATAGAAACTAGGCATCAGAATTCATGAGCAA
GAATACATGATATTTTCTTTTGCCCTAAAATACTGAAATTTTCACAAACGGCTTTAAAAA
AATTTTTTGAATAACTTTTTTGATAGCATATTTGGCGATTATGACGTTGGAATTTAACAG
AACTCAAATCCACAGCTCTCAAATCAAGATACTTAAATTGTAAATTCTTTGTAAGTAAAT
ACGTTCATATGTAGAAGGTGTTTGCCAAATGTGGATGATTTATGTGCCCAACACATATTC
CAAAATTATTCCTGTGAGTATGATACCTTAAAAAGGTCTTCATATATTATTTATTAATTT
GGACATGGACAACTTGGCCCTTGTGTGAATATACCAGAAGCATTTAAAAACTTATGAAAC
GTTTTAGTTTTATACTTCAATAGTTTGTATGTTTGTGTTTTTATTTCTGAGTTTACCATG
TGCTTTATTGTTTGTTTAAAAATGTTATTTGTACCTGTTCTGTTTTTATCATTTCCCTCA
TCATTAGAAAGTTTGACAAAATACTTATTCCCAGAATAGATATTTCAGAGGGATCCAATA
ATGTTGGACCTTTAAATATACTTTTTGTTCAGTTTAACTTGTTTAATAAATAACTTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTATGAATCCAGTTGCAGCAGCTCCACTCTCAGTATTTACTAAAGAATCTACGTCCT
CCAAACACAGCGACCACCATCACCACCATCACCACGAGCACAAGAAGAAGAAGAAGAAGC
ACAAACATAAGCATAAGCACAAGCATAAGCACGACAGTAAAGAAAAGGACAAGGAGCCTT
TCACTTTCTCCAGCCCTGCCAGCGGCAGGTCTATTCGTTCTCCTTCTCTTTCAGATTGAG
AAGGGGCACCAGAGACCTTTTCCTGAGTGTCCAGAAGAAAATACAAAATCAGAGCTTCGT
CCTCCTCTCTAAAGAATGAAGAAAGGGAAGAAACAACAGCAAAAACTAGTTGCCTCTCTC
ATAGAGACTCAAGTTCTAAATATTTGATTTACATTATTTATACAATTGAAATCTAATTAG
GAAAAGGTGTTTTATAGTTCTGAGGAAACCATTTCATCCCATTTCCTCCTTAAAACACAC
ACAGAGCAAACCCTTTCATAAGGCCCTCCTATCCACTGGCAGCCCCCATTCACATCATGG
TCTCCATGTGTACTGCCAAAGTCAATTATGTCTTAAAGCCTTTGATGGATGTTACGGGGC
AAAGTTATGCTTTAAACAGAAGCTACTGCCAAATCTGTGGTGAAAGCACTATTTCCAGTG
AAATACTGAATAACACCATTTGGAATTACTGAAAACAAAGGCTTTTCTATAGGAGTCTTC
TCCATTGCATGTTTTTTTGTTTGTTAGCCATAGAAACTAGGCATCAGAATTCATGAGCAA
GAATACATGATATTTTCTTTTGCCCTAAAATACTGAAATTTTCACAAACGGCTTTAAAAA
AATTTTTTGAATAACTTTTTTGATAGCATATTTGGCGATTATGACGTTGGAATTTAACAG
AACTCAAATCCACAGCTCTCAAATCAAGATACTTAAATTGTAAATTCTTTGTAAGTAAAT
ACGTTCATATGTAGAAGGTGTTTGCCAAATGTGGATGATTTATGTGCCCAACACATATTC
CAAAATTATTCCTGTGAGTATGATACCTTAAAAAGGTCTTCATATATTATTTATTAATTT
GGACATGGACAACTTGGCCCTTGTGTGAATATACCAGAAGCATTTAAAAACTTATGAAAC
GTTTTAGTTTTATACTTCAATAGTTTGTATGTTTGTGTTTTTATTTCTGAGTTTACCATG
TGCTTTATTGTTTGTTTAAAAATGTTATTTGTACCTGTTCTGTTTTTATCATTTCCCTCA
TCATTAGAAAGTTTGACAAAATACTTATTCCCAGAATAGATATTTCAGAGGGATCCAATA
ATGTTGGACCTTTAAATATACTTTTTGTTCAGTTTAACTTGTTTAATAAATAACTTTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11359968|pir||T46307

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11359968|pir||T46307

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-301, - strand, RNAz p=0.976886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-301, - strand, RNAz p=0.976886

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-301, gnl|bosTau2|chr14 (50044653-50044949)
               

               
               1-301, gnl|Hg17|chr8 (120813583-120813283)
               

               
               1-301, gnl|Mm7|chr15 (55076700-55076438)
               


               
               370-759, gnl|bosTau2|chr14 (50044985-50045377)
               

               
               370-759, gnl|Hg17|chr8 (120813241-120812769)
               

               
               370-759, gnl|Mm7|chr15 (55076404-55076050)
               


               
               809-1377, gnl|bosTau2|chr14 (50045377-50045951)
               

               
               809-1377, gnl|Hg17|chr8 (120812769-120812188)
               

               
               809-1377, gnl|Mm7|chr15 (55076050-55075245)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-301, gnl|bosTau2|chr14 (50044653-50044949)
               

               
               1-301, gnl|Hg17|chr8 (120813583-120813283)
               

               
               1-301, gnl|Mm7|chr15 (55076700-55076438)
               


               
               370-759, gnl|bosTau2|chr14 (50044985-50045377)
               

               
               370-759, gnl|Hg17|chr8 (120813241-120812769)
               

               
               370-759, gnl|Mm7|chr15 (55076404-55076050)
               


               
               809-1377, gnl|bosTau2|chr14 (50045377-50045951)
               

               
               809-1377, gnl|Hg17|chr8 (120812769-120812188)
               

               
               809-1377, gnl|Mm7|chr15 (55076050-55075245)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cbr (3.32736)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.32736)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               tra (0.123092)

	1-301, gnl\|bosTau2\|chr14 (50044653-50044949)
	1-301, gnl\|Hg17\|chr8 (120813583-120813283)
	1-301, gnl\|Mm7\|chr15 (55076700-55076438)

	370-759, gnl\|bosTau2\|chr14 (50044985-50045377)
	370-759, gnl\|Hg17\|chr8 (120813241-120812769)
	370-759, gnl\|Mm7\|chr15 (55076404-55076050)

	809-1377, gnl\|bosTau2\|chr14 (50045377-50045951)
	809-1377, gnl\|Hg17\|chr8 (120812769-120812188)
	809-1377, gnl\|Mm7\|chr15 (55076050-55075245)

	cbr (3.32736)
	fce (0.271592)
	kid (0.259471)
	sin (0.174948)
	nje (0.16592)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	lin (0.145603)
	ssp (0.13552)
	tra (0.123092)