Ss1.1-Pig4-TMW8046O07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCAGCCGGTCTTCGAGATCCCTCTCAGCAACGTGTCCCAGTGTACCACGGGCAAGAACG AGGTGACACTGGAATTCCACCAGAATGACGATGCAGAGGTCTCTCTCATGGAGGTGCGCT TCTACGTGCCCCCCACCCAGGAGGATGGCGTGGACCCCGTTGAGGCCTTTGCCCAGAATG TGCTGTCGAAGGCGGATGTGATCCAGGCCACCGGAGATGCCATCTGCATCTTCCGGGAGC TGCAGTGTCTGACTCCCCGAGGCCGTTACGACATTCGCATCTACCCCACTTTTCTGCACC TACACGGCAAGACTTTCGATTACAAGATCCCCTACACCACAGTGCTGCGTCTCTTTTTGC TGCCCCACAAGGACCAGCGCCAGATGTTCTTTGTGATCAGTCTGGATCCCCCCATCAAGC AGGGCCAGACCCGCTACCACTTCCTGATCCTCCTCTTCTCCAAGGACGAGGACATCTCCT TGACTCTCAACATGAACGAGGAAGAGGTGGAGAAGCGCTTTGAGGGGCGGCTCACCAAGA ACATGTCAGGATCCCTCTACGAGATGGTCAGCCGGGTCATGAAGGCACTGGTGAACCGCA AGATCACAGTCCCAGGCAACTTCCAAGGGCATTCGGGGGCCCAGTGCATCACCTGCTCCT ACAAGGCCAGCTCCGGACTGCTGTACCCACTGGAGCGGGGCTTCATCTACGTCCACAAGC CACCAGTGCACATCCGCTTCGACGAGATCTCCTTTGTCAACTTCGCCCGTGGTACCACCA CCACCCGTTCATTTGACTTTGAGATTGAGACCAAGCAGGGCACTCAGTATACCTTCAGTA GCATTGAGAGGGAGGAGTACGGGAAGCTGTTCGATTTTGTCAATGCCAAAAAACTCAACA TCAAAAACCGAGGACTGAAAGAGGGCATGAACCCCAGCTACGATGAATATGCCGACTCTG ATGAAGACCAGCATGATGCTTACCTGGAGCGGATGAAGGAGGAGGGCAAGATCCGGGAGG AGAATGCCAATGACAGCAGCGATGACTCAGGAGAAGAAACCGATGAGTCATTCAACCCAG GTGAAGAGGAGGAAGACGTGGCAGAGGAGTTTGACAGCAACGCCTCGGCCAGCTCCTCCA GTAACGAGGGTGACAGTGACCGAGATGAGAAGAAACGGAAGCAGCTTAAAAAGGCCAAGA TGGCCAAGGATCGCAAGAGCCGCAAGAAGCCCACAGAGGTGAAGAAGGGCAAAGATCCCA ATGCCCCCAAGAGGCCCATGTCTGCCTACATGCTGTGGCTCAATGCCAGCCGAGAGAAGA TCAAGTCAGACCACCCAGGCATCAGTATCACGGATCTTTCCAAGAAGGCAGGCGAGATCT GGAAGGGAATGTCCAAAGAGAAGAAAGAGGAGTGGGATCGCAAGGCTGAGGATGCCAGGA GGGAATATGAAAAAGCCATGAAAGAATATGAGGGAGGCCGGGGTGAATCTTCTAAGAGGG ATAAGTCAAAGAAGAAGAAAAAAGTCAAGGTAAAGATGGAGAAGAAATCAACGCCCTCCA GGGGCTCGTCATCCAAGTCTTCATCACGGCAGCTGAGTGAGAGCTTTAAGAGCAAAGAGT TTGTGTCCAGTGACGAGAGCTCCTCAGGAGAGAACAAGAGCAAGAAGAAGAGACGGCGGA GCGAGGACTCTGAAGAAGAGGACCTAGCCAGTACTCCCCCCAGCTCCGAGGACTCGGGGT CAGCATCTGATGAGTAGAGAGGAGGAAGATTCTCTCTCCTTGGCCTTGCCCGGTCATACC CCAGTCTCCCCACCCGCGTTCTGGTACCAGTTTCTCCTCATGTGAAATACAGTCCTTCGA TTCTGTGCCATCTGAACAAGCTCCTGCCAGGATGCACTTCATGGGGGCAGCAGGGGAGAC GTCTTACTCTGCTGCCTCGCAAGGATGGCTCTTTATAATTTGGGGAGAGATCGGGTGGGA GGCAGGGCAGTACAGGATCCAAATCCTTGTCCTACTTTCCTGACCTTTGGAAACTAGCTG CTGCTTGTCCTGTTCAAGTTGCTGCAAGCAGGGGTCATGTGAGGTCAGGCCTGAAGCTCC TAACTGGGGCTTATTTCTACTTTTATTTTGTATTTCTGGTCTGTGAAAAGCAACATTTAA TAAAGGGAACTGACTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCAGCCGGTCTTCGAGATCCCTCTCAGCAACGTGTCCCAGTGTACCACGGGCAAGAACG AGGTGACACTGGAATTCCACCAGAATGACGATGCAGAGGTCTCTCTCATGGAGGTGCGCT TCTACGTGCCCCCCACCCAGGAGGATGGCGTGGACCCCGTTGAGGCCTTTGCCCAGAATG TGCTGTCGAAGGCGGATGTGATCCAGGCCACCGGAGATGCCATCTGCATCTTCCGGGAGC TGCAGTGTCTGACTCCCCGAGGCCGTTACGACATTCGCATCTACCCCACTTTTCTGCACC TACACGGCAAGACTTTCGATTACAAGATCCCCTACACCACAGTGCTGCGTCTCTTTTTGC TGCCCCACAAGGACCAGCGCCAGATGTTCTTTGTGATCAGTCTGGATCCCCCCATCAAGC AGGGCCAGACCCGCTACCACTTCCTGATCCTCCTCTTCTCCAAGGACGAGGACATCTCCT TGACTCTCAACATGAACGAGGAAGAGGTGGAGAAGCGCTTTGAGGGGCGGCTCACCAAGA ACATGTCAGGATCCCTCTACGAGATGGTCAGCCGGGTCATGAAGGCACTGGTGAACCGCA AGATCACAGTCCCAGGCAACTTCCAAGGGCATTCGGGGGCCCAGTGCATCACCTGCTCCT ACAAGGCCAGCTCCGGACTGCTGTACCCACTGGAGCGGGGCTTCATCTACGTCCACAAGC CACCAGTGCACATCCGCTTCGACGAGATCTCCTTTGTCAACTTCGCCCGTGGTACCACCA CCACCCGTTCATTTGACTTTGAGATTGAGACCAAGCAGGGCACTCAGTATACCTTCAGTA GCATTGAGAGGGAGGAGTACGGGAAGCTGTTCGATTTTGTCAATGCCAAAAAACTCAACA TCAAAAACCGAGGACTGAAAGAGGGCATGAACCCCAGCTACGATGAATATGCCGACTCTG ATGAAGACCAGCATGATGCTTACCTGGAGCGGATGAAGGAGGAGGGCAAGATCCGGGAGG AGAATGCCAATGACAGCAGCGATGACTCAGGAGAAGAAACCGATGAGTCATTCAACCCAG GTGAAGAGGAGGAAGACGTGGCAGAGGAGTTTGACAGCAACGCCTCGGCCAGCTCCTCCA GTAACGAGGGTGACAGTGACCGAGATGAGAAGAAACGGAAGCAGCTTAAAAAGGCCAAGA TGGCCAAGGATCGCAAGAGCCGCAAGAAGCCCACAGAGGTGAAGAAGGGCAAAGATCCCA ATGCCCCCAAGAGGCCCATGTCTGCCTACATGCTGTGGCTCAATGCCAGCCGAGAGAAGA TCAAGTCAGACCACCCAGGCATCAGTATCACGGATCTTTCCAAGAAGGCAGGCGAGATCT GGAAGGGAATGTCCAAAGAGAAGAAAGAGGAGTGGGATCGCAAGGCTGAGGATGCCAGGA GGGAATATGAAAAAGCCATGAAAGAATATGAGGGAGGCCGGGGTGAATCTTCTAAGAGGG ATAAGTCAAAGAAGAAGAAAAAAGTCAAGGTAAAGATGGAGAAGAAATCAACGCCCTCCA GGGGCTCGTCATCCAAGTCTTCATCACGGCAGCTGAGTGAGAGCTTTAAGAGCAAAGAGT TTGTGTCCAGTGACGAGAGCTCCTCAGGAGAGAACAAGAGCAAGAAGAAGAGACGGCGGA GCGAGGACTCTGAAGAAGAGGACCTAGCCAGTACTCCCCCCAGCTCCGAGGACTCGGGGT CAGCATCTGATGAGTAGAGAGGAGGAAGATTCTCTCTCCTTGGCCTTGCCCGGTCATACC CCAGTCTCCCCACCCGCGTTCTGGTACCAGTTTCTCCTCATGTGAAATACAGTCCTTCGA TTCTGTGCCATCTGAACAAGCTCCTGCCAGGATGCACTTCATGGGGGCAGCAGGGGAGAC GTCTTACTCTGCTGCCTCGCAAGGATGGCTCTTTATAATTTGGGGAGAGATCGGGTGGGA GGCAGGGCAGTACAGGATCCAAATCCTTGTCCTACTTTCCTGACCTTTGGAAACTAGCTG CTGCTTGTCCTGTTCAAGTTGCTGCAAGCAGGGGTCATGTGAGGTCAGGCCTGAAGCTCC TAACTGGGGCTTATTTCTACTTTTATTTTGTATTTCTGGTCTGTGAAAAGCAACATTTAA TAAAGGGAACTGACTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 922-1981, + strand, RNAz p=0.999614 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 922-1981, + strand, RNAz p=0.999614 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-165, gnl|bosTau2|chr15 (50787340-50787176) | |
| 1-165, gnl|canFam2|chr18 (41870450-41870253) | |
| 1-165, gnl|danRer3|chrUn (147543661-147543461) | |
| 1-165, gnl|echTel1|scaffold_270485 (2785-2965) | |
| 1-165, gnl|fr1|chrUn (289490977-289491177) | |
| 1-165, gnl|galGal2|chr5 (14302945-14302748) | |
| 1-165, gnl|hg17|chr11 (56857005-56857202) | |
| 1-165, gnl|Hg17|chr11 (56857172-56857008) | |
| 1-165, gnl|loxAfr1|scaffold_42249 (6446-6643) | |
| 1-165, gnl|mm7|chr2 (84884177-84883980) | |
| 1-165, gnl|Mm7|chr2 (84884008-84884172) | |
| 1-165, gnl|monDom2|scaffold_33 (20387870-20388067) | |
| 1-165, gnl|oryCun1|scaffold_192901 (10115-9918) | |
| 1-165, gnl|panTro1|chr9 (57765623-57765820) | |
| 1-165, gnl|rheMac2|chr14 (16087224-16087027) | |
| 1-165, gnl|rn3|chr3 (68171796-68171599) | |
| 1-165, gnl|tetNig1|chr1 (7029675-7029475) | |
| 1-165, gnl|xenTro1|scaffold_379 (899092-899289) | |
| 628-851, gnl|bosTau2|chr15 (50786483-50786260) | |
| 628-851, gnl|Hg17|chr11 (56855940-56855717) | |
| 628-851, gnl|Mm7|chr2 (84885150-84885373) | |
| 922-1065, gnl|bosTau2|chr15 (50784854-50784711) | |
| 922-1065, gnl|canFam2|chr18 (41873106-41872954) | |
| 922-1065, gnl|danRer3|chrUn (147558216-147558068) | |
| 922-1065, gnl|dasNov1|scaffold_105427 (3963-4102) | |
| 922-1065, gnl|echTel1|scaffold_292966 (7524-7364) | |
| 922-1065, gnl|fr1|chrUn (289488101-289488247) | |
| 922-1065, gnl|galGal2|chr5 (14305168-14305026) | |
| 922-1065, gnl|hg17|chr11 (56854330-56854482) | |
| 922-1065, gnl|Hg17|chr11 (56854481-56854338) | |
| 922-1065, gnl|loxAfr1|scaffold_42249 (3824-3976) | |
| 922-1065, gnl|mm7|chr2 (84886560-84886408) | |
| 922-1065, gnl|Mm7|chr2 (84886407-84886550) | |
| 922-1065, gnl|monDom2|scaffold_33 (20384628-20384776) | |
| 922-1065, gnl|oryCun1|scaffold_192901 (13113-12961) | |
| 922-1065, gnl|panTro1|chr9 (57762950-57763102) | |
| 922-1065, gnl|rheMac2|chr14 (16089879-16089727) | |
| 922-1065, gnl|rn3|chr3 (68174313-68174161) | |
| 922-1065, gnl|tetNig1|chr1 (7032507-7032362) | |
| 922-1065, gnl|xenTro1|scaffold_379 (876304-876447) | |
| 1230-1415, gnl|bosTau2|chr15 (50782196-50782011) | |
| 1230-1415, gnl|Hg17|chr11 (56851941-56851756) | |
| 1230-1415, gnl|Mm7|chr2 (84889117-84889302) | |
| 1684-2182, gnl|bosTau2|chr15 (50780634-50780138) | |
| 1684-2182, gnl|Hg17|chr11 (56850530-56850038) | |
| 1684-2182, gnl|Mm7|chr2 (84890360-84890825) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-165, gnl|bosTau2|chr15 (50787340-50787176) | |
| 1-165, gnl|canFam2|chr18 (41870450-41870253) | |
| 1-165, gnl|danRer3|chrUn (147543661-147543461) | |
| 1-165, gnl|echTel1|scaffold_270485 (2785-2965) | |
| 1-165, gnl|fr1|chrUn (289490977-289491177) | |
| 1-165, gnl|galGal2|chr5 (14302945-14302748) | |
| 1-165, gnl|hg17|chr11 (56857005-56857202) | |
| 1-165, gnl|Hg17|chr11 (56857172-56857008) | |
| 1-165, gnl|loxAfr1|scaffold_42249 (6446-6643) | |
| 1-165, gnl|mm7|chr2 (84884177-84883980) | |
| 1-165, gnl|Mm7|chr2 (84884008-84884172) | |
| 1-165, gnl|monDom2|scaffold_33 (20387870-20388067) | |
| 1-165, gnl|oryCun1|scaffold_192901 (10115-9918) | |
| 1-165, gnl|panTro1|chr9 (57765623-57765820) | |
| 1-165, gnl|rheMac2|chr14 (16087224-16087027) | |
| 1-165, gnl|rn3|chr3 (68171796-68171599) | |
| 1-165, gnl|tetNig1|chr1 (7029675-7029475) | |
| 1-165, gnl|xenTro1|scaffold_379 (899092-899289) | |
| 628-851, gnl|bosTau2|chr15 (50786483-50786260) | |
| 628-851, gnl|Hg17|chr11 (56855940-56855717) | |
| 628-851, gnl|Mm7|chr2 (84885150-84885373) | |
| 922-1065, gnl|bosTau2|chr15 (50784854-50784711) | |
| 922-1065, gnl|canFam2|chr18 (41873106-41872954) | |
| 922-1065, gnl|danRer3|chrUn (147558216-147558068) | |
| 922-1065, gnl|dasNov1|scaffold_105427 (3963-4102) | |
| 922-1065, gnl|echTel1|scaffold_292966 (7524-7364) | |
| 922-1065, gnl|fr1|chrUn (289488101-289488247) | |
| 922-1065, gnl|galGal2|chr5 (14305168-14305026) | |
| 922-1065, gnl|hg17|chr11 (56854330-56854482) | |
| 922-1065, gnl|Hg17|chr11 (56854481-56854338) | |
| 922-1065, gnl|loxAfr1|scaffold_42249 (3824-3976) | |
| 922-1065, gnl|mm7|chr2 (84886560-84886408) | |
| 922-1065, gnl|Mm7|chr2 (84886407-84886550) | |
| 922-1065, gnl|monDom2|scaffold_33 (20384628-20384776) | |
| 922-1065, gnl|oryCun1|scaffold_192901 (13113-12961) | |
| 922-1065, gnl|panTro1|chr9 (57762950-57763102) | |
| 922-1065, gnl|rheMac2|chr14 (16089879-16089727) | |
| 922-1065, gnl|rn3|chr3 (68174313-68174161) | |
| 922-1065, gnl|tetNig1|chr1 (7032507-7032362) | |
| 922-1065, gnl|xenTro1|scaffold_379 (876304-876447) | |
| 1230-1415, gnl|bosTau2|chr15 (50782196-50782011) | |
| 1230-1415, gnl|Hg17|chr11 (56851941-56851756) | |
| 1230-1415, gnl|Mm7|chr2 (84889117-84889302) | |
| 1684-2182, gnl|bosTau2|chr15 (50780634-50780138) | |
| 1684-2182, gnl|Hg17|chr11 (56850530-56850038) | |
| 1684-2182, gnl|Mm7|chr2 (84890360-84890825) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| cki (0.495704) | |
| ecc (0.46014) | |
| amn (0.417711) | |
| col (0.390016) | |
| elu (0.385356) | |
| ill (0.351185) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ute (0.265569) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| lun (0.150489) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.495704) | |
| ecc (0.46014) | |
| amn (0.417711) | |
| col (0.390016) | |
| elu (0.385356) | |
| ill (0.351185) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ute (0.265569) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| lun (0.150489) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| eje (0.0988338) |