Ss1.1-Pig4-TMW8046O10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCTGTCGCCACCCACGTCCTCCCCCCGCCCATCTCCCCATCTCACGGGGGGGTGATTT CTACCTCTTGGGCCCAGACAAGTTTGAAGGAGTTCCCAGGTGTTCTCACAGGCTGATGAG TTGGACCTTGGAGTTTGATCCTTGGGCATTCTGGGCAGCCTTGTGCCAAGCACTCCGGGA GCCTTTGCCTCACAGGCAGGATGGCGCTCCGTTGATCTTGGCTCCCCAAGTAGCACAGCG GCTTCTCTTCAGACATTTCAGAAAGGTGGTTATTGCATTTTGGAAAGCCATGCTCATCGA AAACAACTTCGAAGACCTTTTCCTTCTTTAATAGTTTTCTCCCACCGAGACCGTCCTTGA GGCCAGCTGCCGCTCTTCCATTTCTCGGATGTCTGCGCGTTCTCCACGTCTCTCAGTGGA AATGCTGCAGATACATTTAATCGACTGGAGAGCTCGCCTATACTGTGTAGGAAATTACCT CCTTAATTGCCCAGTAGAATTAACTGTCAGCAGATAGGTTCATCTGATTCTAGTACTGCG GTTTTATATTAATAATTTGCAGACTTTTCTCTAACCTGCACTCATGTACAAATTATGAGA AGTTTTAAAATGTAACTGATGAATCAGTATTTGAGCAATCATTGTCTTGATTTTTTTTAA ATTAAAATGTATATTTCTAATCATATTTTATAAAGCAGAGAGAACGGTTGAATGCATGTC TATTTTCCAGGAGGTATTTTTAAGATAAAGCTTTATAATGGCCTGTAAACTTTGCATATC TATGTAGTTTGATACATATTATTGTCACCTTTGAAAATCTTGTGTAAAATCTTGTGAAAA TCTGGTTTTATACAAAATGTTGAATAGTGGAAATTGTATAATTATAATCATATAATTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCTGTCGCCACCCACGTCCTCCCCCCGCCCATCTCCCCATCTCACGGGGGGGTGATTT CTACCTCTTGGGCCCAGACAAGTTTGAAGGAGTTCCCAGGTGTTCTCACAGGCTGATGAG TTGGACCTTGGAGTTTGATCCTTGGGCATTCTGGGCAGCCTTGTGCCAAGCACTCCGGGA GCCTTTGCCTCACAGGCAGGATGGCGCTCCGTTGATCTTGGCTCCCCAAGTAGCACAGCG GCTTCTCTTCAGACATTTCAGAAAGGTGGTTATTGCATTTTGGAAAGCCATGCTCATCGA AAACAACTTCGAAGACCTTTTCCTTCTTTAATAGTTTTCTCCCACCGAGACCGTCCTTGA GGCCAGCTGCCGCTCTTCCATTTCTCGGATGTCTGCGCGTTCTCCACGTCTCTCAGTGGA AATGCTGCAGATACATTTAATCGACTGGAGAGCTCGCCTATACTGTGTAGGAAATTACCT CCTTAATTGCCCAGTAGAATTAACTGTCAGCAGATAGGTTCATCTGATTCTAGTACTGCG GTTTTATATTAATAATTTGCAGACTTTTCTCTAACCTGCACTCATGTACAAATTATGAGA AGTTTTAAAATGTAACTGATGAATCAGTATTTGAGCAATCATTGTCTTGATTTTTTTTAA ATTAAAATGTATATTTCTAATCATATTTTATAAAGCAGAGAGAACGGTTGAATGCATGTC TATTTTCCAGGAGGTATTTTTAAGATAAAGCTTTATAATGGCCTGTAAACTTTGCATATC TATGTAGTTTGATACATATTATTGTCACCTTTGAAAATCTTGTGTAAAATCTTGTGAAAA TCTGGTTTTATACAAAATGTTGAATAGTGGAAATTGTATAATTATAATCATATAATTAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 388-505, - strand, RNAz p=0.836655 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 388-505, - strand, RNAz p=0.836655 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 3-138, gnl|bosTau2|chr8 (45426339-45426473) | |
| 3-138, gnl|canFam2|chr1 (73388040-73388146) | |
| 3-138, gnl|canFam2|chr1 (73388268-73388017) | |
| 3-138, gnl|canFam2|chr1 (73388264-73388003) | |
| 3-138, gnl|dasNov1|scaffold_20078 (4044-4173) | |
| 3-138, gnl|dasNov1|scaffold_20078 (4267-4013) | |
| 3-138, gnl|dasNov1|scaffold_20078 (4263-4003) | |
| 3-138, gnl|echTel1|scaffold_214777 (4238-4113) | |
| 3-138, gnl|echTel1|scaffold_214777 (4032-4275) | |
| 3-138, gnl|echTel1|scaffold_214777 (4032-4280) | |
| 3-138, gnl|hg17|chr5 (53077424-53077695) | |
| 3-138, gnl|hg17|chr7 (48659665-48659918) | |
| 3-138, gnl|hg17|chr8 (57734489-57734606) | |
| 3-138, gnl|Hg17|chr9 (96342857-96342732) | |
| 3-138, gnl|mm7|chr13 (62016668-62016574) | |
| 3-138, gnl|mm7|chr13 (62016488-62016697) | |
| 3-138, gnl|mm7|chr13 (62016492-62016711) | |
| 3-138, gnl|Mm7|chr13 (62016712-62016588) | |
| 3-138, gnl|monDom2|scaffold_19 (498042-498328) | |
| 3-138, gnl|monDom2|scaffold_87 (4905208-4905535) | |
| 3-138, gnl|oryCun1|scaffold_1540 (1878-1724) | |
| 3-138, gnl|oryCun1|scaffold_1540 (1874-1696) | |
| 3-138, gnl|panTro1|chr4 (63196368-63196111) | |
| 3-138, gnl|panTro1|chr6 (50232399-50232652) | |
| 3-138, gnl|panTro1|chr7 (59434921-59435038) | |
| 3-138, gnl|rheMac2|chr3 (77569152-77568906) | |
| 3-138, gnl|rheMac2|chr6 (51401305-51401562) | |
| 3-138, gnl|rheMac2|chr8 (59260416-59260545) | |
| 3-138, gnl|rn3|chr17 (6455879-6455977) | |
| 3-138, gnl|rn3|chr17 (6456073-6455850) | |
| 3-138, gnl|rn3|chr17 (6456069-6455836) | |
| 145-900, gnl|bosTau2|chr8 (45426503-45427236) | |
| 145-900, gnl|Hg17|chr9 (96342714-96341963) | |
| 145-900, gnl|Mm7|chr13 (62016567-62015691) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-138, gnl|bosTau2|chr8 (45426339-45426473) | |
| 3-138, gnl|canFam2|chr1 (73388040-73388146) | |
| 3-138, gnl|canFam2|chr1 (73388268-73388017) | |
| 3-138, gnl|canFam2|chr1 (73388264-73388003) | |
| 3-138, gnl|dasNov1|scaffold_20078 (4044-4173) | |
| 3-138, gnl|dasNov1|scaffold_20078 (4267-4013) | |
| 3-138, gnl|dasNov1|scaffold_20078 (4263-4003) | |
| 3-138, gnl|echTel1|scaffold_214777 (4238-4113) | |
| 3-138, gnl|echTel1|scaffold_214777 (4032-4275) | |
| 3-138, gnl|echTel1|scaffold_214777 (4032-4280) | |
| 3-138, gnl|hg17|chr5 (53077424-53077695) | |
| 3-138, gnl|hg17|chr7 (48659665-48659918) | |
| 3-138, gnl|hg17|chr8 (57734489-57734606) | |
| 3-138, gnl|Hg17|chr9 (96342857-96342732) | |
| 3-138, gnl|mm7|chr13 (62016668-62016574) | |
| 3-138, gnl|mm7|chr13 (62016488-62016697) | |
| 3-138, gnl|mm7|chr13 (62016492-62016711) | |
| 3-138, gnl|Mm7|chr13 (62016712-62016588) | |
| 3-138, gnl|monDom2|scaffold_19 (498042-498328) | |
| 3-138, gnl|monDom2|scaffold_87 (4905208-4905535) | |
| 3-138, gnl|oryCun1|scaffold_1540 (1878-1724) | |
| 3-138, gnl|oryCun1|scaffold_1540 (1874-1696) | |
| 3-138, gnl|panTro1|chr4 (63196368-63196111) | |
| 3-138, gnl|panTro1|chr6 (50232399-50232652) | |
| 3-138, gnl|panTro1|chr7 (59434921-59435038) | |
| 3-138, gnl|rheMac2|chr3 (77569152-77568906) | |
| 3-138, gnl|rheMac2|chr6 (51401305-51401562) | |
| 3-138, gnl|rheMac2|chr8 (59260416-59260545) | |
| 3-138, gnl|rn3|chr17 (6455879-6455977) | |
| 3-138, gnl|rn3|chr17 (6456073-6455850) | |
| 3-138, gnl|rn3|chr17 (6456069-6455836) | |
| 145-900, gnl|bosTau2|chr8 (45426503-45427236) | |
| 145-900, gnl|Hg17|chr9 (96342714-96341963) | |
| 145-900, gnl|Mm7|chr13 (62016567-62015691) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| kid (0.259471) | |
| cmu (0.186393) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| cst (0.140036) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| cmu (0.186393) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| cst (0.140036) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) |