Ss1.1-Pig4-TMW8046O12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCCGCCGCTCCGAGACTCCTGCCGCGCTCTCCGGCCGGTCCTCCGCGTCTCCGCCGC TGAGCGTGGTCCTGCTTCCGATCGAGATGCCCGTCTGGGGAGGTGGCAACAAGTGCGGGG CCTGTGGGAGGACCGTGTACCACGCTGAGGAGGTGCAGTGCGACGGCCGGAGCTTCCACC GCTGCTGCTTCCTGTGCATGGTTTGCAGGAAGAACTTAGACAGTACGACAGTGGCAATTC ACGACGAGGAGGTCTACTGCAAGTCCTGCTACGGGAAGAAGTACGGGCCAAAAGGCTACG GGTACGGCCAGGGCGCTGGCACGCTCAACATGGACCGGGGCGAGAGGCTGGGCATCAAGC CCGAGAGTGTTCAGCCTCACAGGCCTACGACAAATCCAAACACTTCGAAATTTGCTCAGA AATACGGAGGTGCTGAGAAGTGTCCCAGATGCGGGGACTCTGTGTACGCTGCTGAGAAGA TCATTGGTGCTGGAAAGCCCTGGCACAAAAACTGTTTCCGATGTGCTAAGTGTGGCAAGA GTCTTGAATCAACAACTCTGACCGAGAAAGAAGGTGAAATCTATTGTAAAGGGTGCTATG CGAAGAACTTCGGGCCCAAGGGATTTGGCTACGGCCAAGGAGCAGGAGCCCTTGTTCATG CTCAGTAGAGGTGCAGACCCAGAACCAAGACCCCACCGAGGGTCCCTACACAATCCCGCA CAGATCATCTAACACGAAACCACTGTGAGATCCCGCCAGCACTCAAGCACTGTACGTTGC CCTGGGCTTGGATAGTCCAGCTGACCAGTAGGAAGAGAGCACTATACCTTTTTGCTTTAT TCATCAGCATTTCAAGGACCATTTCTTTTACATTTTAAAATAAAACTTAAGCTTGAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCCGCCGCTCCGAGACTCCTGCCGCGCTCTCCGGCCGGTCCTCCGCGTCTCCGCCGC TGAGCGTGGTCCTGCTTCCGATCGAGATGCCCGTCTGGGGAGGTGGCAACAAGTGCGGGG CCTGTGGGAGGACCGTGTACCACGCTGAGGAGGTGCAGTGCGACGGCCGGAGCTTCCACC GCTGCTGCTTCCTGTGCATGGTTTGCAGGAAGAACTTAGACAGTACGACAGTGGCAATTC ACGACGAGGAGGTCTACTGCAAGTCCTGCTACGGGAAGAAGTACGGGCCAAAAGGCTACG GGTACGGCCAGGGCGCTGGCACGCTCAACATGGACCGGGGCGAGAGGCTGGGCATCAAGC CCGAGAGTGTTCAGCCTCACAGGCCTACGACAAATCCAAACACTTCGAAATTTGCTCAGA AATACGGAGGTGCTGAGAAGTGTCCCAGATGCGGGGACTCTGTGTACGCTGCTGAGAAGA TCATTGGTGCTGGAAAGCCCTGGCACAAAAACTGTTTCCGATGTGCTAAGTGTGGCAAGA GTCTTGAATCAACAACTCTGACCGAGAAAGAAGGTGAAATCTATTGTAAAGGGTGCTATG CGAAGAACTTCGGGCCCAAGGGATTTGGCTACGGCCAAGGAGCAGGAGCCCTTGTTCATG CTCAGTAGAGGTGCAGACCCAGAACCAAGACCCCACCGAGGGTCCCTACACAATCCCGCA CAGATCATCTAACACGAAACCACTGTGAGATCCCGCCAGCACTCAAGCACTGTACGTTGC CCTGGGCTTGGATAGTCCAGCTGACCAGTAGGAAGAGAGCACTATACCTTTTTGCTTTAT TCATCAGCATTTCAAGGACCATTTCTTTTACATTTTAAAATAAAACTTAAGCTTGAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 164-369, gnl|bosTau2|chr29 (19425302-19425508) | |
| 164-369, gnl|canFam2|chr21 (44495310-44495503) | |
| 164-369, gnl|danRer3|chrUn (145823057-145822871) | |
| 164-369, gnl|dasNov1|scaffold_263722 (583-736) | |
| 164-369, gnl|echTel1|scaffold_309717 (175596-175409) | |
| 164-369, gnl|fr1|chrUn (69174289-69174100) | |
| 164-369, gnl|galGal2|chr5 (1760670-1760485) | |
| 164-369, gnl|hg17|chr11 (19166254-19166442) | |
| 164-369, gnl|Hg17|chr11 (19166463-19166256) | |
| 164-369, gnl|loxAfr1|scaffold_4266 (3827-4015) | |
| 164-369, gnl|mm7|chr7 (45056127-45056315) | |
| 164-369, gnl|Mm7|chr7 (45056332-45056129) | |
| 164-369, gnl|monDom2|scaffold_10 (65092652-65092833) | |
| 164-369, gnl|oryCun1|scaffold_207919 (47363-47551) | |
| 164-369, gnl|panTro1|chr9_random (11302527-11302716) | |
| 164-369, gnl|rheMac2|chr14 (52685829-52685641) | |
| 164-369, gnl|rn3|chr1 (98684923-98685111) | |
| 164-369, gnl|tetNig1|chr5 (12124594-12124403) | |
| 164-369, gnl|xenTro1|scaffold_1410 (138615-138802) | |
| 777-903, gnl|bosTau2|chr25 (30710520-30710641) | |
| 777-903, gnl|Hg17|chr14 (67783605-67783736) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 164-369, gnl|bosTau2|chr29 (19425302-19425508) | |
| 164-369, gnl|canFam2|chr21 (44495310-44495503) | |
| 164-369, gnl|danRer3|chrUn (145823057-145822871) | |
| 164-369, gnl|dasNov1|scaffold_263722 (583-736) | |
| 164-369, gnl|echTel1|scaffold_309717 (175596-175409) | |
| 164-369, gnl|fr1|chrUn (69174289-69174100) | |
| 164-369, gnl|galGal2|chr5 (1760670-1760485) | |
| 164-369, gnl|hg17|chr11 (19166254-19166442) | |
| 164-369, gnl|Hg17|chr11 (19166463-19166256) | |
| 164-369, gnl|loxAfr1|scaffold_4266 (3827-4015) | |
| 164-369, gnl|mm7|chr7 (45056127-45056315) | |
| 164-369, gnl|Mm7|chr7 (45056332-45056129) | |
| 164-369, gnl|monDom2|scaffold_10 (65092652-65092833) | |
| 164-369, gnl|oryCun1|scaffold_207919 (47363-47551) | |
| 164-369, gnl|panTro1|chr9_random (11302527-11302716) | |
| 164-369, gnl|rheMac2|chr14 (52685829-52685641) | |
| 164-369, gnl|rn3|chr1 (98684923-98685111) | |
| 164-369, gnl|tetNig1|chr5 (12124594-12124403) | |
| 164-369, gnl|xenTro1|scaffold_1410 (138615-138802) | |
| 777-903, gnl|bosTau2|chr25 (30710520-30710641) | |
| 777-903, gnl|Hg17|chr14 (67783605-67783736) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| col (0.390016) | |
| eye (0.341006) | |
| cki (0.330469) | |
| bla (0.248694) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| eye (0.341006) | |
| cki (0.330469) | |
| bla (0.248694) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| eje (0.0988338) |