Non-Coding RNA Search

Ss1.1-Pig4-TMW8046O16.5

Sequence:


               
               ACAATACCTACTTTAAGCTTATTCCAGTTTTCAGCCTTCAGCTGGTTTCCACCTCCATGA
CTCCTCCTTCTCCCCCCAATTAGGGGATGGTGTCTGTTTCCCAGACGGCCAAATTGCTGT
TCTGAGCTTATTGTGACTCTTTTGGAATTGTCTGGGAGCAGGTTAAAGGCCATTATCTTC
TGTCCTGATGAGGTGGCCCAGCTCTCAGTTTCTCTGAGCTCCTCTGACCTAGAGCCACAG
GCATCCCGAAGAGACACAGGAGATCCCTGCTTCTTGGAGCTCAGGAGACATCTGGGAGGG
CTTTAAGGTCTGACAGGACTTCCCAGAGGACAGGAGAACTCCAGTGGGAGCCCAGCTCTG
TCAACGATGTATCCGTCTAACCTCTCGTTCATCGTAAAAGGAAACATGGGGTTTCATACC
AAGTACTATAAACTGTGTCTCTTGTCAGGACACTCACTCCTCTAGGTCTCACGTCCCCAT
CTGCAAAACTGGGGATCAGGACTAGATGCTCGCTGGTTTCTGTGATCTGCCTCTTGCCAC
CATCCTTTCTCAGCTCTGCTTCTCTGGAGGTTTTTTTGGTTTGTTGTTTACTTCGGTTTT
CCCTGGGAATGCTCAGGGTCACTGGATTGTCTCTTTATATGTGATCGTACCAAGTACTCA
GCCTTATGTAGCATGTACAGGTATAGTGACCCAGCAAAGAGCTCTCTCCCACTGACTTGT
TCTGCATGTGTAGTCTCCCTTTTTTCTTCAGACCAACCTGTTCCCCCTTTTCCTACCCGA
CAGCTCTTTTCCCTGTAAGTTGTTACCAGTTTCGCTGATTAGTGGGGTACGTGATGGTTT
GGGCATGATGTCTTCATATGAGGGGAACAGTATAACTTCCTTTGAGGAGATGATATTTGT
AGCTGTTGGAAAGTAAAATAGTGGTGTGATTACTGAACCAAAGGAATTTATGTTTTGTAA
CTTGGGTACTTTATTTTGCATTTTGTTAAAGTATTAAATACTTTTTTCCTGTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATACCTACTTTAAGCTTATTCCAGTTTTCAGCCTTCAGCTGGTTTCCACCTCCATGA
CTCCTCCTTCTCCCCCCAATTAGGGGATGGTGTCTGTTTCCCAGACGGCCAAATTGCTGT
TCTGAGCTTATTGTGACTCTTTTGGAATTGTCTGGGAGCAGGTTAAAGGCCATTATCTTC
TGTCCTGATGAGGTGGCCCAGCTCTCAGTTTCTCTGAGCTCCTCTGACCTAGAGCCACAG
GCATCCCGAAGAGACACAGGAGATCCCTGCTTCTTGGAGCTCAGGAGACATCTGGGAGGG
CTTTAAGGTCTGACAGGACTTCCCAGAGGACAGGAGAACTCCAGTGGGAGCCCAGCTCTG
TCAACGATGTATCCGTCTAACCTCTCGTTCATCGTAAAAGGAAACATGGGGTTTCATACC
AAGTACTATAAACTGTGTCTCTTGTCAGGACACTCACTCCTCTAGGTCTCACGTCCCCAT
CTGCAAAACTGGGGATCAGGACTAGATGCTCGCTGGTTTCTGTGATCTGCCTCTTGCCAC
CATCCTTTCTCAGCTCTGCTTCTCTGGAGGTTTTTTTGGTTTGTTGTTTACTTCGGTTTT
CCCTGGGAATGCTCAGGGTCACTGGATTGTCTCTTTATATGTGATCGTACCAAGTACTCA
GCCTTATGTAGCATGTACAGGTATAGTGACCCAGCAAAGAGCTCTCTCCCACTGACTTGT
TCTGCATGTGTAGTCTCCCTTTTTTCTTCAGACCAACCTGTTCCCCCTTTTCCTACCCGA
CAGCTCTTTTCCCTGTAAGTTGTTACCAGTTTCGCTGATTAGTGGGGTACGTGATGGTTT
GGGCATGATGTCTTCATATGAGGGGAACAGTATAACTTCCTTTGAGGAGATGATATTTGT
AGCTGTTGGAAAGTAAAATAGTGGTGTGATTACTGAACCAAAGGAATTTATGTTTTGTAA
CTTGGGTACTTTATTTTGCATTTTGTTAAAGTATTAAATACTTTTTTCCTGTTAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               14-327, - strand, RNAz p=0.999678
               

               
               799-915, + strand, RNAz p=0.713333

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-327, - strand, RNAz p=0.999678
               

               
               799-915, + strand, RNAz p=0.713333

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               226-351, - strand, RNAmicro p=0.999999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               226-351, - strand, RNAmicro p=0.999999

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK027875, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK027875, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-491, gnl|bosTau2|chr3 (16532356-16531885)
               

               
               1-491, gnl|Hg17|chr1 (147820214-147820749)
               


               
               685-1020, gnl|bosTau2|chr2 (79698525-79698867)
               

               
               685-1020, gnl|Hg17|chr1 (147820929-147821264)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-491, gnl|bosTau2|chr3 (16532356-16531885)
               

               
               1-491, gnl|Hg17|chr1 (147820214-147820749)
               


               
               685-1020, gnl|bosTau2|chr2 (79698525-79698867)
               

               
               685-1020, gnl|Hg17|chr1 (147820929-147821264)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               hea (0.408998)
               

               
               ssp (0.271039)
               

               
               ebs (0.236602)
               

               
               sto (0.179824)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               ssp (0.271039)
               

               
               ebs (0.236602)
               

               
               sto (0.179824)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

	14-327, - strand, RNAz p=0.999678
	799-915, + strand, RNAz p=0.713333

	1-491, gnl\|bosTau2\|chr3 (16532356-16531885)
	1-491, gnl\|Hg17\|chr1 (147820214-147820749)

	685-1020, gnl\|bosTau2\|chr2 (79698525-79698867)
	685-1020, gnl\|Hg17\|chr1 (147820929-147821264)

	hea (0.408998)
	ssp (0.271039)
	ebs (0.236602)
	sto (0.179824)
	mga (0.160205)
	csk (0.140746)
	hlv (0.139256)
	pla (0.133672)
	cly (0.120642)