Non-Coding RNA Search

Ss1.1-Pig4-TMW8046O23.3

Sequence:


               
               GGCCCGGTTCATCCAGCCCCGGCCAACTTTAAATCAGCCTCCACCACCTCTCATTCGCCC
TGCTAATTCAATGCCACCCCGTCTAAACCCAAGACCAGTGTTGTCCACGGTTGGTGGTCA
ACAGCCGCCGTCACTGATCGGAATTCAGACAGATTCACAGTCCTCCTCACTGCACTAAAA
TTAAAGTGGACAGAGCTGCAGTGACTTTGTACCCCATCATTATACCAGTGCTCATCTGAC
TGATGCAAAAGAGGAAAGCATAATCCTTCCTAGATACTGAGGCTGCAAACTAGTTCTGTG
GCAGGGGGCTAGCGTAAGGGGATGTCTAGGAAATGTTTTAGCTCACGCACTGAAATGTTA
TACAACAGAAAGCCTAGGGTTAGCCTCCTTTCTAGAGTATACAGTCAGTGACATGATTTC
ATTAAAGGAGAAAAAGGATTAAGTATTCTCTCTACCAAGGGTTTTTGGTTTTGTCTTTAC
TGTATTTATTTTATTGAGGATCTTTATATTCCTGCCTCTCCATAGTCAAGGCTCTTAGTA
CAGGAATATTGACTTAGGAATTGTGAAACTCCTTAAGTTTTGTAAGTTAAGGATGTTGAA
CTTTTTCTCTTTTTTCTTTAATTTAATTTTTAACATTTTCCTATGTTAGGAGAGCAAGAA
TAAATAGCCTGCATTTCAGATTTTGACATATGTTCATTTAATGCATATTTAAGAAATTAT
AGTTGCATATCCCTTTTTCCAAAAAATCTTGCTTTTTTTTCTAAAGGAATTAAAATATAT
TCCTTTAAAAGAAAGCAATTTAATCAATTGCAAAGCAATTATATGAAACCACAAAGAATG
TACTGAACCTTCTAACCCTTTAACATACAGTTTAGGGTCCTAGTGCAGAGTCCTTGCTTA
AAGGTCATTGACTTGCCATCTGTCAGGAATAAGAGGATCAGAAAAATAATTTTACATATA
AATGAGGACTTAACTTGTTGAAGTACAATGTCTTTAAGTTCCTTAAAAACAGTAATTTTG
GTTTTTTTAATGTTTCTAAAGCTATCTGCTTTTAACTAGTAGTTGCTACATTTGGGGGCT
TAGAAGAGAATTATATTTTGTTGGTTATGTGGAGATAGTGATTATGGAAGCATTTATTTA
CAATACCCTTTTTGTGTTTAGGTTCTGAACTTTCAATTGCCCTCATCCTTATTAATAATG
GTCTGCATTTAATATAAAGGATGTTTTCTGGATAAATCTCTATTGTATTATTTGGATACG
TTTGTGTATTCCTTGCAGCCGACCTGTACTCATGGGTTTGGTTTAGGGTTAAATCATCAA
CATTATTTCAAAAAATAAATGGAAGAATTTGTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCGGTTCATCCAGCCCCGGCCAACTTTAAATCAGCCTCCACCACCTCTCATTCGCCC
TGCTAATTCAATGCCACCCCGTCTAAACCCAAGACCAGTGTTGTCCACGGTTGGTGGTCA
ACAGCCGCCGTCACTGATCGGAATTCAGACAGATTCACAGTCCTCCTCACTGCACTAAAA
TTAAAGTGGACAGAGCTGCAGTGACTTTGTACCCCATCATTATACCAGTGCTCATCTGAC
TGATGCAAAAGAGGAAAGCATAATCCTTCCTAGATACTGAGGCTGCAAACTAGTTCTGTG
GCAGGGGGCTAGCGTAAGGGGATGTCTAGGAAATGTTTTAGCTCACGCACTGAAATGTTA
TACAACAGAAAGCCTAGGGTTAGCCTCCTTTCTAGAGTATACAGTCAGTGACATGATTTC
ATTAAAGGAGAAAAAGGATTAAGTATTCTCTCTACCAAGGGTTTTTGGTTTTGTCTTTAC
TGTATTTATTTTATTGAGGATCTTTATATTCCTGCCTCTCCATAGTCAAGGCTCTTAGTA
CAGGAATATTGACTTAGGAATTGTGAAACTCCTTAAGTTTTGTAAGTTAAGGATGTTGAA
CTTTTTCTCTTTTTTCTTTAATTTAATTTTTAACATTTTCCTATGTTAGGAGAGCAAGAA
TAAATAGCCTGCATTTCAGATTTTGACATATGTTCATTTAATGCATATTTAAGAAATTAT
AGTTGCATATCCCTTTTTCCAAAAAATCTTGCTTTTTTTTCTAAAGGAATTAAAATATAT
TCCTTTAAAAGAAAGCAATTTAATCAATTGCAAAGCAATTATATGAAACCACAAAGAATG
TACTGAACCTTCTAACCCTTTAACATACAGTTTAGGGTCCTAGTGCAGAGTCCTTGCTTA
AAGGTCATTGACTTGCCATCTGTCAGGAATAAGAGGATCAGAAAAATAATTTTACATATA
AATGAGGACTTAACTTGTTGAAGTACAATGTCTTTAAGTTCCTTAAAAACAGTAATTTTG
GTTTTTTTAATGTTTCTAAAGCTATCTGCTTTTAACTAGTAGTTGCTACATTTGGGGGCT
TAGAAGAGAATTATATTTTGTTGGTTATGTGGAGATAGTGATTATGGAAGCATTTATTTA
CAATACCCTTTTTGTGTTTAGGTTCTGAACTTTCAATTGCCCTCATCCTTATTAATAATG
GTCTGCATTTAATATAAAGGATGTTTTCTGGATAAATCTCTATTGTATTATTTGGATACG
TTTGTGTATTCCTTGCAGCCGACCTGTACTCATGGGTTTGGTTTAGGGTTAAATCATCAA
CATTATTTCAAAAAATAAATGGAAGAATTTGTTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               746-865, - strand, RNAz p=0.984196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               746-865, - strand, RNAz p=0.984196

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               761-865, 965934 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778763.1|), 
blast E-value=5.04467e-44, identity=97.14% 
               

               
               761-865, CT020023B20E09 Equine Articular Cartilage cDNA Library Equus 
(gb|CX599473.1|), blast E-value=9.99967e-42, identity=96.19% 
               

               
               761-865, CT02034A2H12 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX603058.1|), blast E-value=9.99967e-42, identity=96.19% 
               

               
               761-865, LB01627.CR_E23 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT815458.1|), 
blast E-value=5.04467e-44, identity=97.14% 
               

               
               761-865, 001031BMUA002428HT BMUA Bos taurus cDNA, mRNA sequence 
(gb|DY167352.1|), blast E-value=3.00018e-42, identity=96.19% 
               

               
               761-865, LB02947.CR_K05 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE353837.1|), 
blast E-value=5.04467e-44, identity=97.14%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               761-865, 965934 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778763.1|), 
blast E-value=5.04467e-44, identity=97.14% 
               

               
               761-865, CT020023B20E09 Equine Articular Cartilage cDNA Library Equus 
(gb|CX599473.1|), blast E-value=9.99967e-42, identity=96.19% 
               

               
               761-865, CT02034A2H12 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX603058.1|), blast E-value=9.99967e-42, identity=96.19% 
               

               
               761-865, LB01627.CR_E23 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT815458.1|), 
blast E-value=5.04467e-44, identity=97.14% 
               

               
               761-865, 001031BMUA002428HT BMUA Bos taurus cDNA, mRNA sequence 
(gb|DY167352.1|), blast E-value=3.00018e-42, identity=96.19% 
               

               
               761-865, LB02947.CR_K05 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE353837.1|), 
blast E-value=5.04467e-44, identity=97.14%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1356, gnl|bosTau2|chr16 (54972302-54973653)
               

               
               1-1356, gnl|Hg17|chr1 (207875331-207876664)
               

               
               1-1356, gnl|Mm7|chr1 (191653830-191652524)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1356, gnl|bosTau2|chr16 (54972302-54973653)
               

               
               1-1356, gnl|Hg17|chr1 (207875331-207876664)
               

               
               1-1356, gnl|Mm7|chr1 (191653830-191652524)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbl (0.573987)
               

               
               cmu (0.186393)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               cmu (0.186393)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	761-865, 965934 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK778763.1\|), blast E-value=5.04467e-44, identity=97.14%
	761-865, CT020023B20E09 Equine Articular Cartilage cDNA Library Equus (gb\|CX599473.1\|), blast E-value=9.99967e-42, identity=96.19%
	761-865, CT02034A2H12 Equine Articular Cartilage cDNA Library Equus caballus (gb\|CX603058.1\|), blast E-value=9.99967e-42, identity=96.19%
	761-865, LB01627.CR_E23 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT815458.1\|), blast E-value=5.04467e-44, identity=97.14%
	761-865, 001031BMUA002428HT BMUA Bos taurus cDNA, mRNA sequence (gb\|DY167352.1\|), blast E-value=3.00018e-42, identity=96.19%
	761-865, LB02947.CR_K05 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE353837.1\|), blast E-value=5.04467e-44, identity=97.14%

	1-1356, gnl\|bosTau2\|chr16 (54972302-54973653)
	1-1356, gnl\|Hg17\|chr1 (207875331-207876664)
	1-1356, gnl\|Mm7\|chr1 (191653830-191652524)

	cbl (0.573987)
	cmu (0.186393)
	ste (0.135208)
	nmm (0.132802)
	cty (0.10408)