Non-Coding RNA Search

Ss1.1-Pig4-TMW8046P04.3

Sequence:


               
               TTTGATTTTAATCCCCCTTGAAGGGGTGATCCTTTCCCTTCACTTCAAAATATAAGATTT
TTTTAAAACCAGCCTGTAAAATTTCTTATTTTTACTGCTATTGAAATGCTATAAAAGATA
ACATATTATTTATGGCTAAAGAATAGAGCTAGGCTAATGTCCACAGCCAGAAGGAATAAA
TAAAGATTCATTTTCATTTCAGTAAGACAACAGATTGTAAGTTTAAATAATGACTTGATT
ACAGACACCACTATGTGAATCCCGGTAATAAGACTTGAGTCAATGAAACCTAATCAGTGT
CATTTCTCTGTGTCTGCCAGTGGTTTAAAATTAAAGCAGGGCAGAGCTAAAGGAGAAAAC
AACCATTTTGTTGTAGGTATAAACACATGAATGATTCAGAAAAGTATTCATCTTGGCTGC
CACACCACATCATGTTAACATTAGGGTGGATTTGATTGTACTTGATCTCATTTGCTCAAG
AAAACTAATAGTTCTACTAAATGATGTTGAACCACTGTCTTTTACACTATCATTATTTTT
TCTCTGGAGAGACAGTTATGAAAGCGTGCTGGGCTAGGGATCCTAGCCCTGAGTCCTAGG
CCCAGGTCTGTATCTAAAGCTGGGGAACCTTAGGCCAGTGCTGAAACCTCTCTGCTCCTC
AGTTTGCTTATCTGTGAAATGGGGCTAATGGTAATTCCTATGCTGCCTACCTCACAGGGC
TGTCATGAGGAAAACTGTAAAGTGCTGTCCACGTGTGAGGTAACTTGATTACCATCCTCG
TCTCTCTTGTGCAGAGGATCTAAGTGTATTTCTTTGTTATTTGTGTGTGTGATGGACGCA
TCCATGTGTTACTTTGAGAAGTATATTGTTTGTGTCCAGTTTGCAAATCTGCTGACATTT
GTGACTCCGACAGAAGGGTTTGTTCTGTGGCCTAACTTGCCAGGTGAGGTGTGGGTTATG
CCTATATGCAAATTAAACTTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGATTTTAATCCCCCTTGAAGGGGTGATCCTTTCCCTTCACTTCAAAATATAAGATTT
TTTTAAAACCAGCCTGTAAAATTTCTTATTTTTACTGCTATTGAAATGCTATAAAAGATA
ACATATTATTTATGGCTAAAGAATAGAGCTAGGCTAATGTCCACAGCCAGAAGGAATAAA
TAAAGATTCATTTTCATTTCAGTAAGACAACAGATTGTAAGTTTAAATAATGACTTGATT
ACAGACACCACTATGTGAATCCCGGTAATAAGACTTGAGTCAATGAAACCTAATCAGTGT
CATTTCTCTGTGTCTGCCAGTGGTTTAAAATTAAAGCAGGGCAGAGCTAAAGGAGAAAAC
AACCATTTTGTTGTAGGTATAAACACATGAATGATTCAGAAAAGTATTCATCTTGGCTGC
CACACCACATCATGTTAACATTAGGGTGGATTTGATTGTACTTGATCTCATTTGCTCAAG
AAAACTAATAGTTCTACTAAATGATGTTGAACCACTGTCTTTTACACTATCATTATTTTT
TCTCTGGAGAGACAGTTATGAAAGCGTGCTGGGCTAGGGATCCTAGCCCTGAGTCCTAGG
CCCAGGTCTGTATCTAAAGCTGGGGAACCTTAGGCCAGTGCTGAAACCTCTCTGCTCCTC
AGTTTGCTTATCTGTGAAATGGGGCTAATGGTAATTCCTATGCTGCCTACCTCACAGGGC
TGTCATGAGGAAAACTGTAAAGTGCTGTCCACGTGTGAGGTAACTTGATTACCATCCTCG
TCTCTCTTGTGCAGAGGATCTAAGTGTATTTCTTTGTTATTTGTGTGTGTGATGGACGCA
TCCATGTGTTACTTTGAGAAGTATATTGTTTGTGTCCAGTTTGCAAATCTGCTGACATTT
GTGACTCCGACAGAAGGGTTTGTTCTGTGGCCTAACTTGCCAGGTGAGGTGTGGGTTATG
CCTATATGCAAATTAAACTTTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               540-659, - strand, RNAz p=0.99045

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               540-659, - strand, RNAz p=0.99045

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               572-678, + strand, RNAmicro p=0.998122

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               572-678, + strand, RNAmicro p=0.998122

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-984, gnl|bosTau2|chr7 (51273539-51272549)
               

               
               2-984, gnl|Hg17|chr5 (80560746-80561722)
               

               
               2-984, gnl|Mm7|chr13 (88954340-88953368)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-984, gnl|bosTau2|chr7 (51273539-51272549)
               

               
               2-984, gnl|Hg17|chr5 (80560746-80561722)
               

               
               2-984, gnl|Mm7|chr13 (88954340-88953368)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fhi (0.169578)

	2-984, gnl\|bosTau2\|chr7 (51273539-51272549)
	2-984, gnl\|Hg17\|chr5 (80560746-80561722)
	2-984, gnl\|Mm7\|chr13 (88954340-88953368)