Non-Coding RNA Search

Ss1.1-Pig4-TMW8046P14.3

Sequence:


               
               ATCAAAGAATGTCATTTCAGGCCCCTGACAAGCAGAAGTAATTGCCACATTGATTTTAGG
TAGAGAGCCATCTTATTTTAATTAAATCCGTTTCATTTGTCTGCACAAAATCCAGTAATT
TGGAGGATAAGCTCCCCACTTTTGTAAGTGCCATTGGAGTTGCATCAGAGTTGAGGAGCG
TGAAGAATTGCTGCTCTCCAAGTTTTGTCTCCTCCACATGTACTAATGTTCTCACAACTT
CCTGAACATAAAGGCCACGAGAACAGGCGAGGGTCCTGCTGTTTTATCAGGCAGTAAAAT
CAGCCAGACCCTGCGGAGAAGACTGCTTTGCTAAATTTATCATGTCTTCAGAGTTTGATT
CATTTTATTTCTCCAAAGATGTTGGCAGTGCAAAGTTAAATTCTGAGCAATAAAAGACAG
TTTCGTACAATTGATAAGTTCATACTTCTGTGCTCCAAACAACTAAAGCGATTTGATCTC
TACACCGATTTCTTGACATTGTTATTTCAAAGGTAAGTAAAGCAAATTACCAGAGAGATG
TTTTTCAGATTTAATTTTCTTGTTTTGCCTTAAAATAAGCCTCAGACCCACAGTAGCAAG
GAAACGTGATACATATTAATCCTTTGGCAGCTTGTGGTTATGAGCAATTTTACTTATTGG
AACTGTCTCCCCTAAGCACTTTTCATTTTCATTTTGAATTAGTAAATATTTTATTACAAG
TCTGGAGATGCGAGGTTTTGAATTTAGCCCTTTTTCTCGGGCTCTCTGTCTAGTCTCATA
ATTCTGAGGTTGGGTTGTTTTAACAATGAGCTAACTGAGAAAAATCACTCGGCAGCCTCT
GACTGTAGCATGGATGTGCCAAACTCTGCATCGAACTCCCTTGACCTTGCGTCGTCCTTG
GGGCCGGGAAGTAGTGTCCAGCTCTGGTAAACAGAACACTGACCATTCTCTGTCTGCCTT
GTAGTGGACAAAGTCCCCGCCACCTCAGTGCAAGGGATTTAGCATCTTTTAAAGGCAGAG
CATTTCTGTATTGCCCGGGGGAGTGTTTGGTTTTTCTTAGCAGGGAGGGGCCCCTTCGGC
TAAGACCGCGGCCGTCAACCAGCGCTTTTCGCAGCTGGAGCCAGGGTTTCTCACCCCCGG
GCCCTGAAGCCACAGCTGTGCAGTGCAGTTCCTTAGGAGGGAGTCATTTCCCTCTTCAGG
TGGGATTTTCAAGAAAAGACAAAGGACCAGCAACTGCATTTTCTCTTTTCCTCCTAGACC
CTGACTACAGCTTGAAGTGCTGCGTGTTCAGTGAGGAGGTGTGGGCACGTGTCGTGGCGG
ATTGAAAAGGATGTCACCTGGGGAAACACACACATTCCCGTCTTGTGCATAGATTGACAA
TGCCAATAAAGTGAAGCATGGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAAGAATGTCATTTCAGGCCCCTGACAAGCAGAAGTAATTGCCACATTGATTTTAGG
TAGAGAGCCATCTTATTTTAATTAAATCCGTTTCATTTGTCTGCACAAAATCCAGTAATT
TGGAGGATAAGCTCCCCACTTTTGTAAGTGCCATTGGAGTTGCATCAGAGTTGAGGAGCG
TGAAGAATTGCTGCTCTCCAAGTTTTGTCTCCTCCACATGTACTAATGTTCTCACAACTT
CCTGAACATAAAGGCCACGAGAACAGGCGAGGGTCCTGCTGTTTTATCAGGCAGTAAAAT
CAGCCAGACCCTGCGGAGAAGACTGCTTTGCTAAATTTATCATGTCTTCAGAGTTTGATT
CATTTTATTTCTCCAAAGATGTTGGCAGTGCAAAGTTAAATTCTGAGCAATAAAAGACAG
TTTCGTACAATTGATAAGTTCATACTTCTGTGCTCCAAACAACTAAAGCGATTTGATCTC
TACACCGATTTCTTGACATTGTTATTTCAAAGGTAAGTAAAGCAAATTACCAGAGAGATG
TTTTTCAGATTTAATTTTCTTGTTTTGCCTTAAAATAAGCCTCAGACCCACAGTAGCAAG
GAAACGTGATACATATTAATCCTTTGGCAGCTTGTGGTTATGAGCAATTTTACTTATTGG
AACTGTCTCCCCTAAGCACTTTTCATTTTCATTTTGAATTAGTAAATATTTTATTACAAG
TCTGGAGATGCGAGGTTTTGAATTTAGCCCTTTTTCTCGGGCTCTCTGTCTAGTCTCATA
ATTCTGAGGTTGGGTTGTTTTAACAATGAGCTAACTGAGAAAAATCACTCGGCAGCCTCT
GACTGTAGCATGGATGTGCCAAACTCTGCATCGAACTCCCTTGACCTTGCGTCGTCCTTG
GGGCCGGGAAGTAGTGTCCAGCTCTGGTAAACAGAACACTGACCATTCTCTGTCTGCCTT
GTAGTGGACAAAGTCCCCGCCACCTCAGTGCAAGGGATTTAGCATCTTTTAAAGGCAGAG
CATTTCTGTATTGCCCGGGGGAGTGTTTGGTTTTTCTTAGCAGGGAGGGGCCCCTTCGGC
TAAGACCGCGGCCGTCAACCAGCGCTTTTCGCAGCTGGAGCCAGGGTTTCTCACCCCCGG
GCCCTGAAGCCACAGCTGTGCAGTGCAGTTCCTTAGGAGGGAGTCATTTCCCTCTTCAGG
TGGGATTTTCAAGAAAAGACAAAGGACCAGCAACTGCATTTTCTCTTTTCCTCCTAGACC
CTGACTACAGCTTGAAGTGCTGCGTGTTCAGTGAGGAGGTGTGGGCACGTGTCGTGGCGG
ATTGAAAAGGATGTCACCTGGGGAAACACACACATTCCCGTCTTGTGCATAGATTGACAA
TGCCAATAAAGTGAAGCATGGTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               220-332, - strand, RNAz p=0.975747

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-332, - strand, RNAz p=0.975747

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               264-341, - strand, RNAmicro p=0.970299

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               264-341, - strand, RNAmicro p=0.970299

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               67-396, gnl|bosTau2|chr13 (37738095-37738409)
               

               
               67-396, gnl|Hg17|chr20 (57038486-57038156)
               

               
               67-396, gnl|Mm7|chr2 (174206634-174206338)
               


               
               456-1396, gnl|bosTau2|chr13 (37738437-37739392)
               

               
               456-1396, gnl|Hg17|chr20 (57038113-57037150)
               

               
               456-1396, gnl|Mm7|chr2 (174206304-174205483)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-396, gnl|bosTau2|chr13 (37738095-37738409)
               

               
               67-396, gnl|Hg17|chr20 (57038486-57038156)
               

               
               67-396, gnl|Mm7|chr2 (174206634-174206338)
               


               
               456-1396, gnl|bosTau2|chr13 (37738437-37739392)
               

               
               456-1396, gnl|Hg17|chr20 (57038113-57037150)
               

               
               456-1396, gnl|Mm7|chr2 (174206304-174205483)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               pla (0.133672)

	67-396, gnl\|bosTau2\|chr13 (37738095-37738409)
	67-396, gnl\|Hg17\|chr20 (57038486-57038156)
	67-396, gnl\|Mm7\|chr2 (174206634-174206338)

	456-1396, gnl\|bosTau2\|chr13 (37738437-37739392)
	456-1396, gnl\|Hg17\|chr20 (57038113-57037150)
	456-1396, gnl\|Mm7\|chr2 (174206304-174205483)