Ss1.1-Pig4-TMW8046P16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGCACCACCGGGAGAGCAGCCTGAGGAGGAGGAGAAGGAGGCAGCAGGAGAGAGTGTA GAGGACGTCTTCACAGAGGTCGTGGGCCAGAAGCGGCAGAAGCCAGGACCTGACCGGGGA GCCAAGAGGCGGAGGGAGGAGGCCCGGCAGCGGGACCAGGCGTTCTATGTCCCCTACCGG CCCAAGGACTTCGAGAGCGAGCGAGGCCTGAGTGTCGGTGGGGACGGGGGAGCCTTTGAG CAGCAGGCGGCTGGCGCTGTCCTGGACCTGATGGGGGACGAAGCCCAGAGTCTGACCAGG GGCCGGCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGACAGTCAGGACAG GAGGACAAGAAAAAGATCAAGACAGAGAGTGGCCGCTATATCAGCAGCTCCTACAAGCGG GACCTATACCAAAAGTGGAAACAGAAACAGAAAATCGATGATCGTGACTCAGAAGAGGAA GGGGCTTTTGACCGGCGAGGCCCAGAGCGAAGAGGTGGGAAGCATGGCCGAGGGCAAGGT GCATCCCAACCCCGCACCCCTGGCACCCCCGCAGGCCGAGTGCGCTCAGAGCTCAAGACC AAGCAGCAGATCCTGAAGCAGCGGCGCCGAGCCCAGAAGCTGCGCTTCCTCCAGCGTGGT GGCCTCAAGCAGCTTTCTGCCCGCAACCGGCGCCGTGCCCAGGAGCTGCAGCAGGGTGCC TTCGGCCGGGGCGCCCACTCTAAGAAGGGCAAGATGAGGAAGAAGATGTAAGGAAGGTGA CCCGGCCCCGTGGTTCCTCAGTTTGTCAAAGCATGGACATCCACAGTGTTCCCCTGTACC ACTGTGTGCCTGGCCCTGAGCTGGGCTCTGGGGAAGCTCCCTACAGGAACTGATCTGTGC AGAGGAGTTCTGTACTGCCACAGGGGGCAGCAGCTGCCTCTTTCTATGACAGGGCACCTT TGAGCAGGGTGTTGAAGGGTGCATAGGAGTTTGCCAGCAAGGCCAGACAGGCCAAGACCT GAGTTCGCAACTCAGTTGCTACTGTTTCCGTGTGTTCAGGGTTCAGAGGTCTTGGCCACA GGGGTTTGAGCCCTGGGCACCTGAGGCCCAATGATGTATTTTTAACATAATAAACCTCTG TTGAGCCCCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGCACCACCGGGAGAGCAGCCTGAGGAGGAGGAGAAGGAGGCAGCAGGAGAGAGTGTA GAGGACGTCTTCACAGAGGTCGTGGGCCAGAAGCGGCAGAAGCCAGGACCTGACCGGGGA GCCAAGAGGCGGAGGGAGGAGGCCCGGCAGCGGGACCAGGCGTTCTATGTCCCCTACCGG CCCAAGGACTTCGAGAGCGAGCGAGGCCTGAGTGTCGGTGGGGACGGGGGAGCCTTTGAG CAGCAGGCGGCTGGCGCTGTCCTGGACCTGATGGGGGACGAAGCCCAGAGTCTGACCAGG GGCCGGCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGACAGTCAGGACAG GAGGACAAGAAAAAGATCAAGACAGAGAGTGGCCGCTATATCAGCAGCTCCTACAAGCGG GACCTATACCAAAAGTGGAAACAGAAACAGAAAATCGATGATCGTGACTCAGAAGAGGAA GGGGCTTTTGACCGGCGAGGCCCAGAGCGAAGAGGTGGGAAGCATGGCCGAGGGCAAGGT GCATCCCAACCCCGCACCCCTGGCACCCCCGCAGGCCGAGTGCGCTCAGAGCTCAAGACC AAGCAGCAGATCCTGAAGCAGCGGCGCCGAGCCCAGAAGCTGCGCTTCCTCCAGCGTGGT GGCCTCAAGCAGCTTTCTGCCCGCAACCGGCGCCGTGCCCAGGAGCTGCAGCAGGGTGCC TTCGGCCGGGGCGCCCACTCTAAGAAGGGCAAGATGAGGAAGAAGATGTAAGGAAGGTGA CCCGGCCCCGTGGTTCCTCAGTTTGTCAAAGCATGGACATCCACAGTGTTCCCCTGTACC ACTGTGTGCCTGGCCCTGAGCTGGGCTCTGGGGAAGCTCCCTACAGGAACTGATCTGTGC AGAGGAGTTCTGTACTGCCACAGGGGGCAGCAGCTGCCTCTTTCTATGACAGGGCACCTT TGAGCAGGGTGTTGAAGGGTGCATAGGAGTTTGCCAGCAAGGCCAGACAGGCCAAGACCT GAGTTCGCAACTCAGTTGCTACTGTTTCCGTGTGTTCAGGGTTCAGAGGTCTTGGCCACA GGGGTTTGAGCCCTGGGCACCTGAGGCCCAATGATGTATTTTTAACATAATAAACCTCTG TTGAGCCCCCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1008-1122, + strand, RNAz p=0.553398 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1008-1122, + strand, RNAz p=0.553398 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 62-214, gnl|bosTau2|chr17 (37850123-37850274) | |
| 62-214, gnl|Hg17|chr12 (112063801-112063650) | |
| 62-214, gnl|Mm7|chr5 (119859686-119859837) | |
| 320-428, gnl|bosTau2|chr17 (37850978-37851086) | |
| 320-428, gnl|canFam2|chr26 (13572308-13572434) | |
| 320-428, gnl|danRer3|chr5 (61390670-61390794) | |
| 320-428, gnl|fr1|chrUn (77825042-77824918) | |
| 320-428, gnl|galGal2|chr15 (9826937-9827063) | |
| 320-428, gnl|hg17|chr12 (112062407-112062533) | |
| 320-428, gnl|Hg17|chr12 (112062523-112062415) | |
| 320-428, gnl|loxAfr1|scaffold_3436 (81696-81566) | |
| 320-428, gnl|mm7|chr5 (119860504-119860382) | |
| 320-428, gnl|Mm7|chr5 (119860386-119860494) | |
| 320-428, gnl|monDom2|scaffold_110 (1514483-1514598) | |
| 320-428, gnl|oryCun1|scaffold_186395 (7544-7418) | |
| 320-428, gnl|panTro1|chr10 (114772966-114773092) | |
| 320-428, gnl|rheMac2|chr11 (114085290-114085416) | |
| 320-428, gnl|rn3|chr12 (36967653-36967775) | |
| 320-428, gnl|tetNig1|chr4 (2298707-2298585) | |
| 320-428, gnl|xenTro1|scaffold_207 (180347-180226) | |
| 537-1149, gnl|bosTau2|chr17 (37852434-37853043) | |
| 537-1149, gnl|Hg17|chr12 (112059636-112059019) | |
| 537-1149, gnl|Mm7|chr5 (119861044-119861606) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-214, gnl|bosTau2|chr17 (37850123-37850274) | |
| 62-214, gnl|Hg17|chr12 (112063801-112063650) | |
| 62-214, gnl|Mm7|chr5 (119859686-119859837) | |
| 320-428, gnl|bosTau2|chr17 (37850978-37851086) | |
| 320-428, gnl|canFam2|chr26 (13572308-13572434) | |
| 320-428, gnl|danRer3|chr5 (61390670-61390794) | |
| 320-428, gnl|fr1|chrUn (77825042-77824918) | |
| 320-428, gnl|galGal2|chr15 (9826937-9827063) | |
| 320-428, gnl|hg17|chr12 (112062407-112062533) | |
| 320-428, gnl|Hg17|chr12 (112062523-112062415) | |
| 320-428, gnl|loxAfr1|scaffold_3436 (81696-81566) | |
| 320-428, gnl|mm7|chr5 (119860504-119860382) | |
| 320-428, gnl|Mm7|chr5 (119860386-119860494) | |
| 320-428, gnl|monDom2|scaffold_110 (1514483-1514598) | |
| 320-428, gnl|oryCun1|scaffold_186395 (7544-7418) | |
| 320-428, gnl|panTro1|chr10 (114772966-114773092) | |
| 320-428, gnl|rheMac2|chr11 (114085290-114085416) | |
| 320-428, gnl|rn3|chr12 (36967653-36967775) | |
| 320-428, gnl|tetNig1|chr4 (2298707-2298585) | |
| 320-428, gnl|xenTro1|scaffold_207 (180347-180226) | |
| 537-1149, gnl|bosTau2|chr17 (37852434-37853043) | |
| 537-1149, gnl|Hg17|chr12 (112059636-112059019) | |
| 537-1149, gnl|Mm7|chr5 (119861044-119861606) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fty (0.17584) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| cty (0.10408) |