Non-Coding RNA Search

Ss1.1-Pig4-TMW8047A03.3

Sequence:


               
               CCCACTCATCAAGCTGTCCCCGAAGAAGACCTGGGAAGGCTTCATTGGGGGTTGCTTTGC
TACTGTGGTCTTTGGCCTTCTGCTGTCCTACGTGATGTCCGGGTACAGATGCTTTGTCTG
CCCTGTGGAGTACAACAATGATACCAACAGCTTCACCGTGGACTGTGAGCCCTCGGATCT
GTTTCGCCTGCAGGAGTACAACATTCCTGGGGTCATCCAGTCGCTCATTGGCTGGAAAAC
AGTCCGGATGTACCCCTTCCAGATTCACAGCATCGCCCTCTCCACTTTTGCCTCACTCAT
CGGGCCCTTTGGAGGGTTCTTCGCTAGTGGATTCAAGCGAGCCTTTAAAATCAAAGACTT
TGCCAATACCATTCCTGGACACGGAGGCATCATGGATCGCTTTGACTGCCAGTATCTGAT
GGCCACCTTTGTCAATGTGTATATCGCCAGTTTTATCAGGGGCCCGAACCCAAGCAAGCT
GGTTCAGCAGTTCCTGACCTTGCGGCCTGATCAGCAGCTCCACATCTTCAACACACTCAG
GTCTCACCTGATGGACAAGGGGATGCTGACAGCTGCCACGGAGGATGAGTAGGGCCACCC
AGGGCTGGGAGAGCAGGGACAGGACTGAGGGCAGGGCTCCAAGGCAGGTCCCACTGGTAT
AACTCAGATGAAGACAAGGCTTCAACTCACTGACTTTTTTTTTTAAATAGTGTTTTTTAT
TTGTGGATTTAAAAAAAAAAATCTGTATACAGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACTCATCAAGCTGTCCCCGAAGAAGACCTGGGAAGGCTTCATTGGGGGTTGCTTTGC
TACTGTGGTCTTTGGCCTTCTGCTGTCCTACGTGATGTCCGGGTACAGATGCTTTGTCTG
CCCTGTGGAGTACAACAATGATACCAACAGCTTCACCGTGGACTGTGAGCCCTCGGATCT
GTTTCGCCTGCAGGAGTACAACATTCCTGGGGTCATCCAGTCGCTCATTGGCTGGAAAAC
AGTCCGGATGTACCCCTTCCAGATTCACAGCATCGCCCTCTCCACTTTTGCCTCACTCAT
CGGGCCCTTTGGAGGGTTCTTCGCTAGTGGATTCAAGCGAGCCTTTAAAATCAAAGACTT
TGCCAATACCATTCCTGGACACGGAGGCATCATGGATCGCTTTGACTGCCAGTATCTGAT
GGCCACCTTTGTCAATGTGTATATCGCCAGTTTTATCAGGGGCCCGAACCCAAGCAAGCT
GGTTCAGCAGTTCCTGACCTTGCGGCCTGATCAGCAGCTCCACATCTTCAACACACTCAG
GTCTCACCTGATGGACAAGGGGATGCTGACAGCTGCCACGGAGGATGAGTAGGGCCACCC
AGGGCTGGGAGAGCAGGGACAGGACTGAGGGCAGGGCTCCAAGGCAGGTCCCACTGGTAT
AACTCAGATGAAGACAAGGCTTCAACTCACTGACTTTTTTTTTTAAATAGTGTTTTTTAT
TTGTGGATTTAAAAAAAAAAATCTGTATACAGTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876176|ref|XP_599550.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876176|ref|XP_599550.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               79-235, gnl|bosTau2|chr13 (30348127-30347971)
               

               
               79-235, gnl|Hg17|chr20 (5115329-5115485)
               

               
               79-235, gnl|Mm7|chr2 (132042929-132043085)
               


               
               452-755, gnl|bosTau2|chr13 (30345736-30345438)
               

               
               452-755, gnl|Hg17|chr20 (5118740-5119051)
               

               
               452-755, gnl|Mm7|chr2 (132045998-132046303)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-235, gnl|bosTau2|chr13 (30348127-30347971)
               

               
               79-235, gnl|Hg17|chr20 (5115329-5115485)
               

               
               79-235, gnl|Mm7|chr2 (132042929-132043085)
               


               
               452-755, gnl|bosTau2|chr13 (30345736-30345438)
               

               
               452-755, gnl|Hg17|chr20 (5118740-5119051)
               

               
               452-755, gnl|Mm7|chr2 (132045998-132046303)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

	79-235, gnl\|bosTau2\|chr13 (30348127-30347971)
	79-235, gnl\|Hg17\|chr20 (5115329-5115485)
	79-235, gnl\|Mm7\|chr2 (132042929-132043085)

	452-755, gnl\|bosTau2\|chr13 (30345736-30345438)
	452-755, gnl\|Hg17\|chr20 (5118740-5119051)
	452-755, gnl\|Mm7\|chr2 (132045998-132046303)

	fbs (0.175346)
	fhi (0.169578)
	spl (0.143184)
	ova (0.129132)
	bla (0.124347)