Non-Coding RNA Search

Ss1.1-Pig4-TMW8047A06.5

Sequence:


               
               TATTTTTGATTAATATTAGTTCATTATTAAATCATTTATTTTCATCTATATTGGCCATTA
AAAATTTATTTGCATTTATTCCTTTAAAATAATTGAGTTTGTGTCTAATAAATCTGTTTT
ATCATTGCTACAAGTTTTAAAAAAGAACCTTTCACTAGTACATGCAGAGGTTCATATTTC
TGCTAAAAATTATTTTTTTAAAAATAGGTTGTAGCTGTATTTATTGGTCATGCAGTAAAT
AGAGGAAATGTACAAGACATATTTTTTCTTTAGCACAAAGGGACCTATCCTCATCCTGAA
AGTTTGTTGCTTTAAAAGCAAGTATCTCTCCATAAATATTATGGCCTTCCATTTTCTCCA
TACATCTTTTAGGATCCACTTGTGCATGTAGTTGAGACCACTGTCTCTTAATATAGCACT
TTTCAATTCTCTCTAAAGAAATACTTATGTACTACTATCACATGTTGTAAATTTTCATGT
AATAGTGTTTTCTGTGACTAAACTCCATTTTGATTGGCAGCTAAGACTTTTTTTCCTGTG
GCTTTAATTTATCTAAGAGGTCTTTGCATATAGATGAAATGTATAATTTGCCTGGCGGAC
TATTTGCGTTTTGTGGCCTTAGTTTGTTTATTGACATTAATGAGTGTTTTAAAAAAGTTT
TTAATGAATAGTCTTAAATCTAAATTTGTGTGAATAATAATCCTTTTAACACAGTGCTTT
TTTGTAGCTGTCTAAGTGTGTTAAATTGTTAAGCTATTTCTTTGTAAAATAGGACAATGG
AATGCATAGAGGTTTTTTTTTTTTTCCTGTAAAGTATTTTTTTAATAAACAAAGTCTGAT
TTGTCCTCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTTGATTAATATTAGTTCATTATTAAATCATTTATTTTCATCTATATTGGCCATTA
AAAATTTATTTGCATTTATTCCTTTAAAATAATTGAGTTTGTGTCTAATAAATCTGTTTT
ATCATTGCTACAAGTTTTAAAAAAGAACCTTTCACTAGTACATGCAGAGGTTCATATTTC
TGCTAAAAATTATTTTTTTAAAAATAGGTTGTAGCTGTATTTATTGGTCATGCAGTAAAT
AGAGGAAATGTACAAGACATATTTTTTCTTTAGCACAAAGGGACCTATCCTCATCCTGAA
AGTTTGTTGCTTTAAAAGCAAGTATCTCTCCATAAATATTATGGCCTTCCATTTTCTCCA
TACATCTTTTAGGATCCACTTGTGCATGTAGTTGAGACCACTGTCTCTTAATATAGCACT
TTTCAATTCTCTCTAAAGAAATACTTATGTACTACTATCACATGTTGTAAATTTTCATGT
AATAGTGTTTTCTGTGACTAAACTCCATTTTGATTGGCAGCTAAGACTTTTTTTCCTGTG
GCTTTAATTTATCTAAGAGGTCTTTGCATATAGATGAAATGTATAATTTGCCTGGCGGAC
TATTTGCGTTTTGTGGCCTTAGTTTGTTTATTGACATTAATGAGTGTTTTAAAAAAGTTT
TTAATGAATAGTCTTAAATCTAAATTTGTGTGAATAATAATCCTTTTAACACAGTGCTTT
TTTGTAGCTGTCTAAGTGTGTTAAATTGTTAAGCTATTTCTTTGTAAAATAGGACAATGG
AATGCATAGAGGTTTTTTTTTTTTTCCTGTAAAGTATTTTTTTAATAAACAAAGTCTGAT
TTGTCCTCGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               272-502, - strand, RNAz p=0.976

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-502, - strand, RNAz p=0.976

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-847, gnl|bosTau2|chr3 (24522516-24523350)
               

               
               1-847, gnl|Hg17|chr1 (114017324-114016499)
               

               
               1-847, gnl|Mm7|chr3 (103759779-103760601)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-847, gnl|bosTau2|chr3 (24522516-24523350)
               

               
               1-847, gnl|Hg17|chr1 (114017324-114016499)
               

               
               1-847, gnl|Mm7|chr3 (103759779-103760601)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ret (0.257467)
               

               
               mas (0.210305)
               

               
               fco (0.157208)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               mas (0.210305)
               

               
               fco (0.157208)
               

               
               ebs (0.118301)

	1-847, gnl\|bosTau2\|chr3 (24522516-24523350)
	1-847, gnl\|Hg17\|chr1 (114017324-114016499)
	1-847, gnl\|Mm7\|chr3 (103759779-103760601)