Non-Coding RNA Search

Ss1.1-Pig4-TMW8047A12.5

Sequence:


               
               CTCGGGCAGCGGGCAGCCAGCCTCCCAGCCCGACTCGCCGCTGCCGCCAGCGTCGCCTGC
GCCGTCACGGGCCCGGAGCCCCACTCCTCCTCCAGCCACAGGGTCCCAGCCACTGCTCAA
GGGCAGTGTGGCGCCGGCGCCGCCCGCAACCCCTGCGCCAGGTGTGCAGCTAGACGTAGA
GGCGCTCATCCCCACGCATGACGAGCAGGGCCGACCCATCCCCGAGTGGAAGCGCCAGGT
GATGGTCCGCAAGCTGCAGCTGAAGATGCAGGAGGAGGAGGAGCAGAAACGGAAGGAGGA
GGAGGAAGAGGCCTGGCTGGCCAGCATGCCTGCCTGGAGGCGGGACATCCTGCGGAAGAA
ACTAGAAGAGGAGAGGGAGCAGAAGCGGAAAGAGGAGGAGCGACAGAAGCAGGAGGAGAT
GCAGCGGGAGAAAGAGCAGTCGGAGAAGCTGCGGACACTCGGCTACGATGAGAGCAAGCT
GGCGCCCTGGCAGCGACAGATCATTCTGAAGAAGGGGGACATCGCTAAGTACTAGATGCC
GCCCTCCTGCCTGCAGCCTTGCGAGCTTGGGGGGCCCCAGCCCCCGACCCGGCCTGCCCC
GCTCGGGTGGAAGGGCTGGGAGCCGCACCGCCCTCCCTCCCGCACCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGGCAGCGGGCAGCCAGCCTCCCAGCCCGACTCGCCGCTGCCGCCAGCGTCGCCTGC
GCCGTCACGGGCCCGGAGCCCCACTCCTCCTCCAGCCACAGGGTCCCAGCCACTGCTCAA
GGGCAGTGTGGCGCCGGCGCCGCCCGCAACCCCTGCGCCAGGTGTGCAGCTAGACGTAGA
GGCGCTCATCCCCACGCATGACGAGCAGGGCCGACCCATCCCCGAGTGGAAGCGCCAGGT
GATGGTCCGCAAGCTGCAGCTGAAGATGCAGGAGGAGGAGGAGCAGAAACGGAAGGAGGA
GGAGGAAGAGGCCTGGCTGGCCAGCATGCCTGCCTGGAGGCGGGACATCCTGCGGAAGAA
ACTAGAAGAGGAGAGGGAGCAGAAGCGGAAAGAGGAGGAGCGACAGAAGCAGGAGGAGAT
GCAGCGGGAGAAAGAGCAGTCGGAGAAGCTGCGGACACTCGGCTACGATGAGAGCAAGCT
GGCGCCCTGGCAGCGACAGATCATTCTGAAGAAGGGGGACATCGCTAAGTACTAGATGCC
GCCCTCCTGCCTGCAGCCTTGCGAGCTTGGGGGGCCCCAGCCCCCGACCCGGCCTGCCCC
GCTCGGGTGGAAGGGCTGGGAGCCGCACCGCCCTCCCTCCCGCACCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9Y329_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9Y329_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-219, - strand, RNAz p=0.710946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-219, - strand, RNAz p=0.710946

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               101-217, + strand, RNAmicro p=0.914853

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               101-217, + strand, RNAmicro p=0.914853

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               21-308, gnl|bosTau2|chr16 (34709749-34709465)
               

               
               21-308, gnl|Hg17|chr1 (6446151-6446435)
               

               
               21-308, gnl|Mm7|chr4 (151117882-151117598)
               


               
               387-643, gnl|bosTau2|chr16 (34703797-34703554)
               

               
               387-643, gnl|Hg17|chr1 (6454324-6454584)
               

               
               387-643, gnl|Mm7|chr4 (151110808-151110535)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-308, gnl|bosTau2|chr16 (34709749-34709465)
               

               
               21-308, gnl|Hg17|chr1 (6446151-6446435)
               

               
               21-308, gnl|Mm7|chr4 (151117882-151117598)
               


               
               387-643, gnl|bosTau2|chr16 (34703797-34703554)
               

               
               387-643, gnl|Hg17|chr1 (6454324-6454584)
               

               
               387-643, gnl|Mm7|chr4 (151110808-151110535)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.33184)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               nco (0.161734)

	21-308, gnl\|bosTau2\|chr16 (34709749-34709465)
	21-308, gnl\|Hg17\|chr1 (6446151-6446435)
	21-308, gnl\|Mm7\|chr4 (151117882-151117598)

	387-643, gnl\|bosTau2\|chr16 (34703797-34703554)
	387-643, gnl\|Hg17\|chr1 (6454324-6454584)
	387-643, gnl\|Mm7\|chr4 (151110808-151110535)