Non-Coding RNA Search

Ss1.1-Pig4-TMW8047A15.3

Sequence:


               
               CACAGACGCATCGAGTTGGCTTTCCGTGTGTGTGAGAGCTCGGTAACGTTGGTGCGCTCC
GGTGGTGCGGCTTGTGATCGGTTTGCTTGCGAAGCCCTGCCTGCTGACTGACTGACTGGC
CGACGGCGCCCGCAAGATGAAGCTGTCCCTGGTGGCTGCAGTGCTGCTGCTGCTCGGCGC
GGCGCGGCCGGAGGAGGAGGACAAGAAGGAGGATGTGGGCACGGTGGTCGGCATCGACCT
GGGCACCACCTACTCGTGCGTTGGGGTGTTCAAGAATGGCCGTGTGGAGATCATCGCCAA
CGATCAGGGCAACCGCATCACGCCGTCATATGTGGCCTTCACTCCTGAAGGGGAGCGTCT
GATCGGCGATGCAGCCAAGAACCAGCTCACCTCTAATCCTGAGAACACGGTCTTCGACGC
CAAGCGGCTCATCGGCCGGACATGGAATGACCCGTCTGTGCAGCAAGACATCAAGTTCCT
GCCTTTCAAGGTGGTTGAGAAGAAAACTAAACCATATATTCAAGTTGATATTGGAGGTGG
GCAAACAAAGACATTTGCACCAGAAGAAATTTCTGCCATGGTTCTCACTAAAATGAAGGA
AACTGCTGAGGCTTATTTGGGAAAGAAGGTTACTCATGCAGTTGTTACTGTACCAGCCTA
TTTCAATGATGCCCAACGCCAGGCAACCAAGGACGCTGGAACTATTGCTGGGTTGAATGT
CATGAGGATCATCAATGAGCCTACGGCAGCTGCTATTGCTTATGGCCTGGATAAGAGGGA
AGGGGAGAAGAACATCCTGGTGTTTGATCTGGGTGGTGGAACCTTTGATGTGTCCCTTCT
CACCATTGATAATGGTGTCTTTGAAGTCGTGGCCACTAACGGAGATACTCACCTGGGTGG
AGAAGACTTTGACCAGCGTGTCATGGAACACTTCATCAAGCTCTACAAGAAGAAGACTGG
CAAAGATGTTCGGAAAGACAACAGAGCTGTGCAGAAACTCCGGCGCGAGGTAGAAAAGGC
CAAACGGGCCCTGTCTTCTCAGCATCAAGCAAGAATTGAAATTGAGTCCTTCTATGAAGG
AGAAGACTTCTCTGAGACCCTGACTCGGGCCAAATTTGAAGAGCTAAACATGGACCTTTT
CCGTTCTACCATGAAACCTGTCCAGAAAGTGCTGGAAGATTCTGATTTAAAGAAATCTGA
TATTGATGAAATTGTTCTTGTTGGTGGCTCTACTCGCATCCCAAAGATTCAACAACTGGT
TAAAGAGTTCTTCAATGGCAAGGAGCCATCCCGTGGCATAAACCCAGATGAGGCTGTAGC
TTACGGTGCTGCTGTTCAGGCTGGGGTACTCTCTGGTGATCAAGATACAGGTGATCTGGT
CCTGCTTGATGTATGTCCCCTTACACTTGGTATTGAAACCGTGGGAGGTGTCATGACCAA
ACTGATTCCAAGGAACACTGTGGTGCCCACTAAGAAATCTCAGATCTTTTCTACAGCCTC
TGATAATCAGCCAACTGTTACCATCAAGGTCTATGAAGGTGAGCGACCCCTGACAAAAGA
TAATCACCTTCTGGGAACTTTTGATTTGACTGGAATTCCTCCTGCTCCTCGTGGAGTCCC
GCAGATTGAAGTCACCTTTGAAATAGATGTGAATGGCATTCTTCGAGTGACTGCTGAAGA
CAAAGGTACCTGCCCGGGCGGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGACGCATCGAGTTGGCTTTCCGTGTGTGTGAGAGCTCGGTAACGTTGGTGCGCTCC
GGTGGTGCGGCTTGTGATCGGTTTGCTTGCGAAGCCCTGCCTGCTGACTGACTGACTGGC
CGACGGCGCCCGCAAGATGAAGCTGTCCCTGGTGGCTGCAGTGCTGCTGCTGCTCGGCGC
GGCGCGGCCGGAGGAGGAGGACAAGAAGGAGGATGTGGGCACGGTGGTCGGCATCGACCT
GGGCACCACCTACTCGTGCGTTGGGGTGTTCAAGAATGGCCGTGTGGAGATCATCGCCAA
CGATCAGGGCAACCGCATCACGCCGTCATATGTGGCCTTCACTCCTGAAGGGGAGCGTCT
GATCGGCGATGCAGCCAAGAACCAGCTCACCTCTAATCCTGAGAACACGGTCTTCGACGC
CAAGCGGCTCATCGGCCGGACATGGAATGACCCGTCTGTGCAGCAAGACATCAAGTTCCT
GCCTTTCAAGGTGGTTGAGAAGAAAACTAAACCATATATTCAAGTTGATATTGGAGGTGG
GCAAACAAAGACATTTGCACCAGAAGAAATTTCTGCCATGGTTCTCACTAAAATGAAGGA
AACTGCTGAGGCTTATTTGGGAAAGAAGGTTACTCATGCAGTTGTTACTGTACCAGCCTA
TTTCAATGATGCCCAACGCCAGGCAACCAAGGACGCTGGAACTATTGCTGGGTTGAATGT
CATGAGGATCATCAATGAGCCTACGGCAGCTGCTATTGCTTATGGCCTGGATAAGAGGGA
AGGGGAGAAGAACATCCTGGTGTTTGATCTGGGTGGTGGAACCTTTGATGTGTCCCTTCT
CACCATTGATAATGGTGTCTTTGAAGTCGTGGCCACTAACGGAGATACTCACCTGGGTGG
AGAAGACTTTGACCAGCGTGTCATGGAACACTTCATCAAGCTCTACAAGAAGAAGACTGG
CAAAGATGTTCGGAAAGACAACAGAGCTGTGCAGAAACTCCGGCGCGAGGTAGAAAAGGC
CAAACGGGCCCTGTCTTCTCAGCATCAAGCAAGAATTGAAATTGAGTCCTTCTATGAAGG
AGAAGACTTCTCTGAGACCCTGACTCGGGCCAAATTTGAAGAGCTAAACATGGACCTTTT
CCGTTCTACCATGAAACCTGTCCAGAAAGTGCTGGAAGATTCTGATTTAAAGAAATCTGA
TATTGATGAAATTGTTCTTGTTGGTGGCTCTACTCGCATCCCAAAGATTCAACAACTGGT
TAAAGAGTTCTTCAATGGCAAGGAGCCATCCCGTGGCATAAACCCAGATGAGGCTGTAGC
TTACGGTGCTGCTGTTCAGGCTGGGGTACTCTCTGGTGATCAAGATACAGGTGATCTGGT
CCTGCTTGATGTATGTCCCCTTACACTTGGTATTGAAACCGTGGGAGGTGTCATGACCAA
ACTGATTCCAAGGAACACTGTGGTGCCCACTAAGAAATCTCAGATCTTTTCTACAGCCTC
TGATAATCAGCCAACTGTTACCATCAAGGTCTATGAAGGTGAGCGACCCCTGACAAAAGA
TAATCACCTTCTGGGAACTTTTGATTTGACTGGAATTCCTCCTGCTCCTCGTGGAGTCCC
GCAGATTGAAGTCACCTTTGAAATAGATGTGAATGGCATTCTTCGAGTGACTGCTGAAGA
CAAAGGTACCTGCCCGGGCGGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57092103|ref|XP_537847.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57092103|ref|XP_537847.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               968-1127, - strand, RNAz p=0.957095

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               968-1127, - strand, RNAz p=0.957095

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               218-1690, gnl|bosTau2|chr10 (51572782-51571301)
               

               
               218-1690, gnl|Hg17|chr14 (64077333-64078814)
               

               
               218-1690, gnl|Mm7|chr12 (74362732-74364213)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-1690, gnl|bosTau2|chr10 (51572782-51571301)
               

               
               218-1690, gnl|Hg17|chr14 (64077333-64078814)
               

               
               218-1690, gnl|Mm7|chr12 (74362732-74364213)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	218-1690, gnl\|bosTau2\|chr10 (51572782-51571301)
	218-1690, gnl\|Hg17\|chr14 (64077333-64078814)
	218-1690, gnl\|Mm7\|chr12 (74362732-74364213)