Ss1.1-Pig4-TMW8047A22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGATGATGGTAGAAATGAAATACGATACCAAGAAAGCCCCACTTGGGAAGCTGACAGTG GCACAAATCAAGGCAGGTTACCAGTCTCTTAAGAAGATTGAGGATTGTATTCGGGCTGGC CAGCATGGACGAGCTCTTGTGGACGCGTGCAATGAATTTTACACCAGAATCCCACATGAC TTTGGACTCCGTACTCCTCCATTAATCCGGACAGAGCAAGAACTCTTAGACAAATTACAG CTACTAGAGGCTTTGGGAGACATTGAAATTGCCATTAAGCTGGTGAAAACAGAACTGCAA AGCCCAGAACACCCATTGGACCAGCACTATAAAAAACTACATTGTGCTTTGCACCCTTTA GACCATGAGAGTAACGAATTCAAAGTGATTTCCCAGTACCTACAGTCTACCCATGCTCCC ACACACAGTGACTATACCATGACCTTGCTGGATGTTTTTGAAGTAGAGAAGGAGGGGGAG AAAGAAGCCTTCAGAGAGGACCTACCTAACAGGATGCTGCTATGGCATGGTTCCAGGCTG AGTAACTGGGTGGGAATCCTGAGCCACGGGCTTCGAATTGCCCCACCTGAAGCTCCCATA ACAGGTTACATGTTTGGAAAAGGAATCTACTTTGCTGACATGTCTTCCAAGAGTGCTAAT TACTGCTTTGCCACTCGCCTAAAGGATACTGGACTGCTGCTCTTATCAGAGGTAGCTCTA GGTCAGTGTAATGAGCTATTAGGGGCCAATCCAGAGGCAGAAGGATTACTTCAGGACAAG CATAGCACCAAGGGGCTGGGCAAGATGGCTCCCAGTCCTTCACGTGCCATCACCTTGAAT GGGAGTACGGTGCCCTTGGGACCAGCAAGTGACACAGGAATTCTGAATCCAGAGGGTTAT ACCCTCAACTACAATGAGTTTGTTGTCTATAACCCCAATCAGGTCCGTATGCGATACCTC CTAAAGGTTCAATTTAATTTTCTGCAGCTGTGGTAAATGTTGATATTAAATAAACCAGAG AAGAGTCTTCAAGCAAGAAAACAGACCATGTTGTACTTTTGATTTTCTTATATTTTCTGA AATAAAGATAGTACAGATTTAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGATGATGGTAGAAATGAAATACGATACCAAGAAAGCCCCACTTGGGAAGCTGACAGTG GCACAAATCAAGGCAGGTTACCAGTCTCTTAAGAAGATTGAGGATTGTATTCGGGCTGGC CAGCATGGACGAGCTCTTGTGGACGCGTGCAATGAATTTTACACCAGAATCCCACATGAC TTTGGACTCCGTACTCCTCCATTAATCCGGACAGAGCAAGAACTCTTAGACAAATTACAG CTACTAGAGGCTTTGGGAGACATTGAAATTGCCATTAAGCTGGTGAAAACAGAACTGCAA AGCCCAGAACACCCATTGGACCAGCACTATAAAAAACTACATTGTGCTTTGCACCCTTTA GACCATGAGAGTAACGAATTCAAAGTGATTTCCCAGTACCTACAGTCTACCCATGCTCCC ACACACAGTGACTATACCATGACCTTGCTGGATGTTTTTGAAGTAGAGAAGGAGGGGGAG AAAGAAGCCTTCAGAGAGGACCTACCTAACAGGATGCTGCTATGGCATGGTTCCAGGCTG AGTAACTGGGTGGGAATCCTGAGCCACGGGCTTCGAATTGCCCCACCTGAAGCTCCCATA ACAGGTTACATGTTTGGAAAAGGAATCTACTTTGCTGACATGTCTTCCAAGAGTGCTAAT TACTGCTTTGCCACTCGCCTAAAGGATACTGGACTGCTGCTCTTATCAGAGGTAGCTCTA GGTCAGTGTAATGAGCTATTAGGGGCCAATCCAGAGGCAGAAGGATTACTTCAGGACAAG CATAGCACCAAGGGGCTGGGCAAGATGGCTCCCAGTCCTTCACGTGCCATCACCTTGAAT GGGAGTACGGTGCCCTTGGGACCAGCAAGTGACACAGGAATTCTGAATCCAGAGGGTTAT ACCCTCAACTACAATGAGTTTGTTGTCTATAACCCCAATCAGGTCCGTATGCGATACCTC CTAAAGGTTCAATTTAATTTTCTGCAGCTGTGGTAAATGTTGATATTAAATAAACCAGAG AAGAGTCTTCAAGCAAGAAAACAGACCATGTTGTACTTTTGATTTTCTTATATTTTCTGA AATAAAGATAGTACAGATTTAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 46-185, gnl|bosTau2|chr10 (16470112-16469973) | |
| 46-185, gnl|canFam2|chr15 (20716708-20716880) | |
| 46-185, gnl|danRer3|chr2 (34556072-34555922) | |
| 46-185, gnl|dasNov1|scaffold_38697 (10352-10517) | |
| 46-185, gnl|echTel1|scaffold_318614 (78758-78589) | |
| 46-185, gnl|fr1|chrUn (292039125-292039279) | |
| 46-185, gnl|hg17|chr14 (19892783-19892952) | |
| 46-185, gnl|Hg17|chr14 (19892807-19892946) | |
| 46-185, gnl|loxAfr1|scaffold_91222 (1473-1640) | |
| 46-185, gnl|mm7|chr14 (46151204-46151373) | |
| 46-185, gnl|Mm7|chr14 (46151228-46151367) | |
| 46-185, gnl|monDom2|scaffold_12 (30499104-30499272) | |
| 46-185, gnl|oryCun1|scaffold_210637 (77741-77909) | |
| 46-185, gnl|panTro1|chrUn_random (21213217-21213386) | |
| 46-185, gnl|rheMac2|chr7 (83064636-83064805) | |
| 46-185, gnl|rn3|chr15 (26813567-26813736) | |
| 46-185, gnl|tetNig1|chrUn_random (40652917-40652761) | |
| 46-185, gnl|xenTro1|scaffold_1222 (216343-216489) | |
| 385-513, gnl|bosTau2|chr10 (16468684-16468556) | |
| 385-513, gnl|canFam2|chr15 (20719069-20719245) | |
| 385-513, gnl|danRer3|chr2 (34554158-34553991) | |
| 385-513, gnl|dasNov1|scaffold_38697 (11834-12009) | |
| 385-513, gnl|echTel1|scaffold_318614 (77203-77028) | |
| 385-513, gnl|fr1|chrUn (292041561-292041736) | |
| 385-513, gnl|hg17|chr14 (19894294-19894470) | |
| 385-513, gnl|Hg17|chr14 (19894306-19894434) | |
| 385-513, gnl|mm7|chr14 (46153546-46153720) | |
| 385-513, gnl|Mm7|chr14 (46153558-46153686) | |
| 385-513, gnl|monDom2|scaffold_12 (30501107-30501289) | |
| 385-513, gnl|oryCun1|scaffold_210637 (79957-80133) | |
| 385-513, gnl|panTro1|chrUn_random (21214728-21214904) | |
| 385-513, gnl|rheMac2|chr7 (83066133-83066309) | |
| 385-513, gnl|rn3|chr15 (26815019-26815193) | |
| 385-513, gnl|tetNig1|chrUn_random (40651670-40651493) | |
| 385-513, gnl|xenTro1|scaffold_1222 (218117-218304) | |
| 612-714, gnl|bosTau2|chr10 (16467977-16467875) | |
| 612-714, gnl|canFam2|chr15 (20720171-20720285) | |
| 612-714, gnl|danRer3|chr2 (34553631-34553515) | |
| 612-714, gnl|dasNov1|scaffold_38697 (12598-12714) | |
| 612-714, gnl|echTel1|scaffold_318614 (76416-76300) | |
| 612-714, gnl|fr1|chrUn (292042100-292042201) | |
| 612-714, gnl|hg17|chr14 (19895050-19895166) | |
| 612-714, gnl|Hg17|chr14 (19895049-19895151) | |
| 612-714, gnl|loxAfr1|scaffold_30616 (24813-24914) | |
| 612-714, gnl|mm7|chr14 (46154375-46154492) | |
| 612-714, gnl|Mm7|chr14 (46154374-46154476) | |
| 612-714, gnl|monDom2|scaffold_12 (30502288-30502404) | |
| 612-714, gnl|oryCun1|scaffold_210637 (81046-81162) | |
| 612-714, gnl|panTro1|chrUn_random (21215485-21215601) | |
| 612-714, gnl|rheMac2|chr7 (83066889-83067005) | |
| 612-714, gnl|rn3|chr15 (26815954-26816071) | |
| 612-714, gnl|tetNig1|chrUn_random (40651120-40650996) | |
| 612-714, gnl|xenTro1|scaffold_1222 (219836-219939) | |
| 837-1101, gnl|bosTau2|chr10 (16467412-16467138) | |
| 837-1101, gnl|Hg17|chr14 (19895637-19895903) | |
| 837-1101, gnl|Mm7|chr14 (46154932-46155197) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-185, gnl|bosTau2|chr10 (16470112-16469973) | |
| 46-185, gnl|canFam2|chr15 (20716708-20716880) | |
| 46-185, gnl|danRer3|chr2 (34556072-34555922) | |
| 46-185, gnl|dasNov1|scaffold_38697 (10352-10517) | |
| 46-185, gnl|echTel1|scaffold_318614 (78758-78589) | |
| 46-185, gnl|fr1|chrUn (292039125-292039279) | |
| 46-185, gnl|hg17|chr14 (19892783-19892952) | |
| 46-185, gnl|Hg17|chr14 (19892807-19892946) | |
| 46-185, gnl|loxAfr1|scaffold_91222 (1473-1640) | |
| 46-185, gnl|mm7|chr14 (46151204-46151373) | |
| 46-185, gnl|Mm7|chr14 (46151228-46151367) | |
| 46-185, gnl|monDom2|scaffold_12 (30499104-30499272) | |
| 46-185, gnl|oryCun1|scaffold_210637 (77741-77909) | |
| 46-185, gnl|panTro1|chrUn_random (21213217-21213386) | |
| 46-185, gnl|rheMac2|chr7 (83064636-83064805) | |
| 46-185, gnl|rn3|chr15 (26813567-26813736) | |
| 46-185, gnl|tetNig1|chrUn_random (40652917-40652761) | |
| 46-185, gnl|xenTro1|scaffold_1222 (216343-216489) | |
| 385-513, gnl|bosTau2|chr10 (16468684-16468556) | |
| 385-513, gnl|canFam2|chr15 (20719069-20719245) | |
| 385-513, gnl|danRer3|chr2 (34554158-34553991) | |
| 385-513, gnl|dasNov1|scaffold_38697 (11834-12009) | |
| 385-513, gnl|echTel1|scaffold_318614 (77203-77028) | |
| 385-513, gnl|fr1|chrUn (292041561-292041736) | |
| 385-513, gnl|hg17|chr14 (19894294-19894470) | |
| 385-513, gnl|Hg17|chr14 (19894306-19894434) | |
| 385-513, gnl|mm7|chr14 (46153546-46153720) | |
| 385-513, gnl|Mm7|chr14 (46153558-46153686) | |
| 385-513, gnl|monDom2|scaffold_12 (30501107-30501289) | |
| 385-513, gnl|oryCun1|scaffold_210637 (79957-80133) | |
| 385-513, gnl|panTro1|chrUn_random (21214728-21214904) | |
| 385-513, gnl|rheMac2|chr7 (83066133-83066309) | |
| 385-513, gnl|rn3|chr15 (26815019-26815193) | |
| 385-513, gnl|tetNig1|chrUn_random (40651670-40651493) | |
| 385-513, gnl|xenTro1|scaffold_1222 (218117-218304) | |
| 612-714, gnl|bosTau2|chr10 (16467977-16467875) | |
| 612-714, gnl|canFam2|chr15 (20720171-20720285) | |
| 612-714, gnl|danRer3|chr2 (34553631-34553515) | |
| 612-714, gnl|dasNov1|scaffold_38697 (12598-12714) | |
| 612-714, gnl|echTel1|scaffold_318614 (76416-76300) | |
| 612-714, gnl|fr1|chrUn (292042100-292042201) | |
| 612-714, gnl|hg17|chr14 (19895050-19895166) | |
| 612-714, gnl|Hg17|chr14 (19895049-19895151) | |
| 612-714, gnl|loxAfr1|scaffold_30616 (24813-24914) | |
| 612-714, gnl|mm7|chr14 (46154375-46154492) | |
| 612-714, gnl|Mm7|chr14 (46154374-46154476) | |
| 612-714, gnl|monDom2|scaffold_12 (30502288-30502404) | |
| 612-714, gnl|oryCun1|scaffold_210637 (81046-81162) | |
| 612-714, gnl|panTro1|chrUn_random (21215485-21215601) | |
| 612-714, gnl|rheMac2|chr7 (83066889-83067005) | |
| 612-714, gnl|rn3|chr15 (26815954-26816071) | |
| 612-714, gnl|tetNig1|chrUn_random (40651120-40650996) | |
| 612-714, gnl|xenTro1|scaffold_1222 (219836-219939) | |
| 837-1101, gnl|bosTau2|chr10 (16467412-16467138) | |
| 837-1101, gnl|Hg17|chr14 (19895637-19895903) | |
| 837-1101, gnl|Mm7|chr14 (46154932-46155197) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fce (0.271592) | |
| pla (0.267344) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| col (0.195008) | |
| gul (0.177588) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ova (0.129132) | |
| ecc (0.115035) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fce (0.271592) | |
| pla (0.267344) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| col (0.195008) | |
| gul (0.177588) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ova (0.129132) | |
| ecc (0.115035) |