Ss1.1-Pig4-TMW8047B05.5.51
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGTTCCAGCTGCTGCTGCCGAGGGGAAAATGATGCCCAGGTTGGGCTCCCAGGGCCGC CGGCCGAGGGGAGGCCCACACTGCACACGCGCAGACCGATCACCCGCGTCAAAAGGCGAA GAGAACGCGCGTTTCCCACGTCCTGCGCACCCAGCTGCCAAGCGTTCGTCTCTGCCTTGA CTCCCGCCACCGCAGCAGGGCTGGCGCGCCCACGTCTGAAGAGCGATGCCGCGGGAGATC ATCACCCTGCAGCTGGGCCAGTGCGGCAACCAGATTGGGTTCGAGTTCTGGAAACAACTG TGCGCCGAGCATGGCATCAGCCCCGAGGGCATCGTGGAGGAGTTCGCCACCGAGGGCACT GACCGCAAGGACGTCTTCTTCTACCAGGCGGATGATGAGCACTACATCCCCAGGGCGGTG CTGCTGGACCTGGAGCCGCGGGTGATCCACTCCATCCTCAATTCCCCCTATGCCAAGCTC TACAACCCAGAGAACATCTACCTGTCGGAGCATGGAGGAGGAGCTGGCAACAACTGGGCC AGCGGATTCTCCCAGGGAGAGAAGATCCATGAGGACATTTTTGACATCATAGACCGGGAG GCAGATGGCAGTGACAGTCTAGAGGGCTTCGTGCTGTGTCACTCCATTGCTGGGGGAACA GGCTCTGGCCTGGGCTCCTACCTCTTAGAACGGCTCAACGACAGGTACCCCAAGAAGCTG GTGCAGACTTACTCAGTGTTTCCCAACCAGGACGAGATGAGCGATGTGGTGGTCCAGCCC TACAACTCGCTGCTCACGCTCAAGAGGCTGACCCAGAACGCAGACTGTGTGGTGGTGCTG GACAACACAGCCCTGAACCGGATCGCCACAGACCGCCTGCACATCCAGAACCCGTCCTTC TCCCAGATCAACCAGCTGGTGTCCACCATCATGTCGGCCAGCACCACCACCCTGCGCTAC CCCGGCTACATGAACAACGACCTCATCGGCCTCATCGCCTCGCTCATCCCCACACCGCGG CTCCACTTCCTCATGACCGGCTACACCCCGCTCACCACGGACCAGTCGGTGGCCAGCGTG AGGAAGACCACGGTCCTGGACGTCATGAGGCGGCTGCTGCAGCCCAAGAACGTGATGGTG TCCACAGGCCGGGATCGCCAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCAG GGGGAGGTGGACCCCACCCAGGTCCACAAGAGCCTGCAGCGGATCCGGGAACGGAAGCTG GCCAACTTCATCCCCTGGGGCCCAGCCAGCATCCAGGTGGCCCTGTCGAGGAAGTCGCCC TACCTGCCTTCTGCCCACAGGGTCAGTGGGCTCATGATGGCCAACCACACCAGCATCTCC TCCCTCTTTGAGCGGACCTGTCGCCAGTACGACAAGCTGCGGAAGCGGGAGGCCTTCCTG GAGCAGTTCCGCAAGGAGGACATCTTCAAGGAGAACTTTGACGAGCTAGATACTTCCAGG GAGATTGTACAGCAGCTCATTGACGAGTACCACGCAGCCACACGGCCAGACTACATCTCC TGGGGCACCCAGGAGCAGTGAGTCCCCTAGGACAATGACCCTCATCTGCCTTACTGGTTG GCCTAGGCCCCACCTGACTGACCACCCCCTCAGAGCACAGATCAGGGACCTCGCACTTCT TTCTGACACACACACACACACACACACACGCTCTCTGTTGGCCTGGGGACACATTGACTT CACCTCTTACGAGACTATTTATGTTTAATAAAGCACTGGATGTAAATGAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGTTCCAGCTGCTGCTGCCGAGGGGAAAATGATGCCCAGGTTGGGCTCCCAGGGCCGC CGGCCGAGGGGAGGCCCACACTGCACACGCGCAGACCGATCACCCGCGTCAAAAGGCGAA GAGAACGCGCGTTTCCCACGTCCTGCGCACCCAGCTGCCAAGCGTTCGTCTCTGCCTTGA CTCCCGCCACCGCAGCAGGGCTGGCGCGCCCACGTCTGAAGAGCGATGCCGCGGGAGATC ATCACCCTGCAGCTGGGCCAGTGCGGCAACCAGATTGGGTTCGAGTTCTGGAAACAACTG TGCGCCGAGCATGGCATCAGCCCCGAGGGCATCGTGGAGGAGTTCGCCACCGAGGGCACT GACCGCAAGGACGTCTTCTTCTACCAGGCGGATGATGAGCACTACATCCCCAGGGCGGTG CTGCTGGACCTGGAGCCGCGGGTGATCCACTCCATCCTCAATTCCCCCTATGCCAAGCTC TACAACCCAGAGAACATCTACCTGTCGGAGCATGGAGGAGGAGCTGGCAACAACTGGGCC AGCGGATTCTCCCAGGGAGAGAAGATCCATGAGGACATTTTTGACATCATAGACCGGGAG GCAGATGGCAGTGACAGTCTAGAGGGCTTCGTGCTGTGTCACTCCATTGCTGGGGGAACA GGCTCTGGCCTGGGCTCCTACCTCTTAGAACGGCTCAACGACAGGTACCCCAAGAAGCTG GTGCAGACTTACTCAGTGTTTCCCAACCAGGACGAGATGAGCGATGTGGTGGTCCAGCCC TACAACTCGCTGCTCACGCTCAAGAGGCTGACCCAGAACGCAGACTGTGTGGTGGTGCTG GACAACACAGCCCTGAACCGGATCGCCACAGACCGCCTGCACATCCAGAACCCGTCCTTC TCCCAGATCAACCAGCTGGTGTCCACCATCATGTCGGCCAGCACCACCACCCTGCGCTAC CCCGGCTACATGAACAACGACCTCATCGGCCTCATCGCCTCGCTCATCCCCACACCGCGG CTCCACTTCCTCATGACCGGCTACACCCCGCTCACCACGGACCAGTCGGTGGCCAGCGTG AGGAAGACCACGGTCCTGGACGTCATGAGGCGGCTGCTGCAGCCCAAGAACGTGATGGTG TCCACAGGCCGGGATCGCCAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCAG GGGGAGGTGGACCCCACCCAGGTCCACAAGAGCCTGCAGCGGATCCGGGAACGGAAGCTG GCCAACTTCATCCCCTGGGGCCCAGCCAGCATCCAGGTGGCCCTGTCGAGGAAGTCGCCC TACCTGCCTTCTGCCCACAGGGTCAGTGGGCTCATGATGGCCAACCACACCAGCATCTCC TCCCTCTTTGAGCGGACCTGTCGCCAGTACGACAAGCTGCGGAAGCGGGAGGCCTTCCTG GAGCAGTTCCGCAAGGAGGACATCTTCAAGGAGAACTTTGACGAGCTAGATACTTCCAGG GAGATTGTACAGCAGCTCATTGACGAGTACCACGCAGCCACACGGCCAGACTACATCTCC TGGGGCACCCAGGAGCAGTGAGTCCCCTAGGACAATGACCCTCATCTGCCTTACTGGTTG GCCTAGGCCCCACCTGACTGACCACCCCCTCAGAGCACAGATCAGGGACCTCGCACTTCT TTCTGACACACACACACACACACACACACGCTCTCTGTTGGCCTGGGGACACATTGACTT CACCTCTTACGAGACTATTTATGTTTAATAAAGCACTGGATGTAAATGAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 497-1662, + strand, RNAz p=0.565272 | |
| 1213-1313, + strand, RNAz p=0.640472 | |
| 1251-1370, - strand, RNAz p=0.921806 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 497-1662, + strand, RNAz p=0.565272 | |
| 1213-1313, + strand, RNAz p=0.640472 | |
| 1251-1370, - strand, RNAz p=0.921806 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-277, gnl|bosTau2|chr19 (39046940-39046664) | |
| 2-277, gnl|Hg17|chr17 (38064826-38065099) | |
| 2-277, gnl|Mm7|chr11 (101264935-101265210) | |
| 497-1138, gnl|bosTau2|chr23 (31858017-31857380) | |
| 497-1138, gnl|Hg17|chr6 (3171058-3170421) | |
| 497-1138, gnl|Mm7|chr13 (33546091-33545454) | |
| 520-1055, gnl|bosTau2|chr13 (37744718-37744183) | |
| 520-1055, gnl|Hg17|chr20 (57032163-57032698) | |
| 520-1055, gnl|Mm7|chr2 (174201206-174201741) | |
| 1213-1382, gnl|bosTau2|chr19 (39042630-39042460) | |
| 1213-1382, gnl|canFam2|chr9 (23640186-23639999) | |
| 1213-1382, gnl|danRer3|chr3 (32969049-32968871) | |
| 1213-1382, gnl|dasNov1|scaffold_23171 (12500-12338) | |
| 1213-1382, gnl|echTel1|scaffold_321173 (28826-29006) | |
| 1213-1382, gnl|fr1|chrUn (22757851-22758033) | |
| 1213-1382, gnl|galGal2|chr27_random (193781-193604) | |
| 1213-1382, gnl|hg17|chr17 (38071857-38072035) | |
| 1213-1382, gnl|Hg17|chr17 (38071857-38072027) | |
| 1213-1382, gnl|loxAfr1|scaffold_89057 (9038-8860) | |
| 1213-1382, gnl|mm7|chr11 (101270056-101270234) | |
| 1213-1382, gnl|Mm7|chr11 (101270056-101270226) | |
| 1213-1382, gnl|monDom2|scaffold_18 (53148606-53148785) | |
| 1213-1382, gnl|oryCun1|scaffold_195630 (2680-2856) | |
| 1213-1382, gnl|panTro1|chr19 (41237176-41237354) | |
| 1213-1382, gnl|rheMac2|chr16 (52789041-52789219) | |
| 1213-1382, gnl|rn3|chr10 (90196414-90196592) | |
| 1213-1382, gnl|tetNig1|chr3 (12397743-12397925) | |
| 1213-1382, gnl|xenTro1|scaffold_3202 (29532-29700) | |
| 1384-1790, gnl|bosTau2|chr19 (38779495-38779100) | |
| 1384-1790, gnl|Hg17|chr17 (38020388-38020782) | |
| 1384-1790, gnl|Mm7|chr11 (101235071-101235458) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-277, gnl|bosTau2|chr19 (39046940-39046664) | |
| 2-277, gnl|Hg17|chr17 (38064826-38065099) | |
| 2-277, gnl|Mm7|chr11 (101264935-101265210) | |
| 497-1138, gnl|bosTau2|chr23 (31858017-31857380) | |
| 497-1138, gnl|Hg17|chr6 (3171058-3170421) | |
| 497-1138, gnl|Mm7|chr13 (33546091-33545454) | |
| 520-1055, gnl|bosTau2|chr13 (37744718-37744183) | |
| 520-1055, gnl|Hg17|chr20 (57032163-57032698) | |
| 520-1055, gnl|Mm7|chr2 (174201206-174201741) | |
| 1213-1382, gnl|bosTau2|chr19 (39042630-39042460) | |
| 1213-1382, gnl|canFam2|chr9 (23640186-23639999) | |
| 1213-1382, gnl|danRer3|chr3 (32969049-32968871) | |
| 1213-1382, gnl|dasNov1|scaffold_23171 (12500-12338) | |
| 1213-1382, gnl|echTel1|scaffold_321173 (28826-29006) | |
| 1213-1382, gnl|fr1|chrUn (22757851-22758033) | |
| 1213-1382, gnl|galGal2|chr27_random (193781-193604) | |
| 1213-1382, gnl|hg17|chr17 (38071857-38072035) | |
| 1213-1382, gnl|Hg17|chr17 (38071857-38072027) | |
| 1213-1382, gnl|loxAfr1|scaffold_89057 (9038-8860) | |
| 1213-1382, gnl|mm7|chr11 (101270056-101270234) | |
| 1213-1382, gnl|Mm7|chr11 (101270056-101270226) | |
| 1213-1382, gnl|monDom2|scaffold_18 (53148606-53148785) | |
| 1213-1382, gnl|oryCun1|scaffold_195630 (2680-2856) | |
| 1213-1382, gnl|panTro1|chr19 (41237176-41237354) | |
| 1213-1382, gnl|rheMac2|chr16 (52789041-52789219) | |
| 1213-1382, gnl|rn3|chr10 (90196414-90196592) | |
| 1213-1382, gnl|tetNig1|chr3 (12397743-12397925) | |
| 1213-1382, gnl|xenTro1|scaffold_3202 (29532-29700) | |
| 1384-1790, gnl|bosTau2|chr19 (38779495-38779100) | |
| 1384-1790, gnl|Hg17|chr17 (38020388-38020782) | |
| 1384-1790, gnl|Mm7|chr11 (101235071-101235458) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.396458) | |
| ebs (0.354904) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| ebs (0.354904) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |