Ss1.1-Pig4-TMW8047B13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGACTCCACACTGGGGAGAAGCGCTACCAGTGCAGTGTTTGTGGCAAGGCCTTTACCA GAATGCTGGGCTTTTCCATCACCTCAGGATCCACACAGGGGAGAAACCTTACCAGTGCAA TCAGTGCAGTAAGAGCTTTAGTCGACGTTCTGTCCTCATTAAGCACCAGAGAATTCACAC TGGAGAAAGACCTTATGAATGTGAAGACTGTGGCAAGAACTTCATTTACCACTGCAACCT CATCCAGCATCGGAAAGTCCACCCTGTGGCTGAATCCAGCTAGCTCCTGGCTGCGGGTCC ACCCAGGAAGAAGCTGCACAGGAGATCTTGCTTGAAGCATTGATAAGCTTTCCCACAGCT ATGATGGCATCTATTTGGGCTATCCAGGCCCACAAAGACCAGGACGAACTATTGGAAGTA AAGGTTGAGGAGGAGGAGGATGTGAAGGAGGAGCACAAATATACCACCAGACAGGATCAG AACCTGCAAAAGAACAACACCCATAGCAGGGAGGTCTTCCGACAGCACTTCAGGCATTTC TGCTACCAGGAAACGTCTGGACCCCGTGAGGCTTTGAGCCGACTCCGGGAACTTTGCCAT CAGTGGCTGAGGCCAGAGACCCATACCAAGGAACAAATTCTAGAGCTGTTGGTGCTGGAG CAATTCCTGACCATCCTGCCTGAGGAGCTCCAAGCCTGGGTCCAAGAACAGCATCCAGAG AGTGGGGAAGAGGTGGTGACTGTGCTGGAGGCTTTAGAGAGAGAGTTGGATGAGCCAGGA TATCAGGTCTCAGTTCACACTGAGGAACAGGAAATGTTCTTGCAGGAGGTGGCACCTCTA GGATCAGAACAAGAACCCGGTATGTCTCTCCCATCCGTGAAAGTCCAGCTAAAGTGTGAA TCTCCGGACCTTGAAGCCCAGCAGGAGCAAGTTTCAGATGTTGATACTGGAAATGAGTAC AGGAATTTAACTCCAAAGCAAGAAGTTTCTGAAGAAATGAAATCATATGGGAATATATCT AGCAAATTTGAAAATGAAATAGCTCAATCTACTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGACTCCACACTGGGGAGAAGCGCTACCAGTGCAGTGTTTGTGGCAAGGCCTTTACCA GAATGCTGGGCTTTTCCATCACCTCAGGATCCACACAGGGGAGAAACCTTACCAGTGCAA TCAGTGCAGTAAGAGCTTTAGTCGACGTTCTGTCCTCATTAAGCACCAGAGAATTCACAC TGGAGAAAGACCTTATGAATGTGAAGACTGTGGCAAGAACTTCATTTACCACTGCAACCT CATCCAGCATCGGAAAGTCCACCCTGTGGCTGAATCCAGCTAGCTCCTGGCTGCGGGTCC ACCCAGGAAGAAGCTGCACAGGAGATCTTGCTTGAAGCATTGATAAGCTTTCCCACAGCT ATGATGGCATCTATTTGGGCTATCCAGGCCCACAAAGACCAGGACGAACTATTGGAAGTA AAGGTTGAGGAGGAGGAGGATGTGAAGGAGGAGCACAAATATACCACCAGACAGGATCAG AACCTGCAAAAGAACAACACCCATAGCAGGGAGGTCTTCCGACAGCACTTCAGGCATTTC TGCTACCAGGAAACGTCTGGACCCCGTGAGGCTTTGAGCCGACTCCGGGAACTTTGCCAT CAGTGGCTGAGGCCAGAGACCCATACCAAGGAACAAATTCTAGAGCTGTTGGTGCTGGAG CAATTCCTGACCATCCTGCCTGAGGAGCTCCAAGCCTGGGTCCAAGAACAGCATCCAGAG AGTGGGGAAGAGGTGGTGACTGTGCTGGAGGCTTTAGAGAGAGAGTTGGATGAGCCAGGA TATCAGGTCTCAGTTCACACTGAGGAACAGGAAATGTTCTTGCAGGAGGTGGCACCTCTA GGATCAGAACAAGAACCCGGTATGTCTCTCCCATCCGTGAAAGTCCAGCTAAAGTGTGAA TCTCCGGACCTTGAAGCCCAGCAGGAGCAAGTTTCAGATGTTGATACTGGAAATGAGTAC AGGAATTTAACTCCAAAGCAAGAAGTTTCTGAAGAAATGAAATCATATGGGAATATATCT AGCAAATTTGAAAATGAAATAGCTCAATCTACTGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 1-277, gnl|bosTau2|chr14 (3080021-3079745) | |
| 1-277, gnl|canFam2|chr13 (41193224-41193452) | |
| 1-277, gnl|danRer3|chr24 (2438400-2438175) | |
| 1-277, gnl|dasNov1|scaffold_187656 (1041-1269) | |
| 1-277, gnl|echTel1|scaffold_263108 (4003-3775) | |
| 1-277, gnl|fr1|chrUn (150325777-150325546) | |
| 1-277, gnl|galGal2|chr18 (22932-22663) | |
| 1-277, gnl|hg17|chr8 (146126980-146127208) | |
| 1-277, gnl|Hg17|chr8 (146127286-146127010) | |
| 1-277, gnl|loxAfr1|scaffold_20757 (43342-43570) | |
| 1-277, gnl|mm7|chr15 (77016797-77016999) | |
| 1-277, gnl|monDom2|scaffold_79 (4467318-4467090) | |
| 1-277, gnl|oryCun1|scaffold_199636 (36059-35831) | |
| 1-277, gnl|panTro1|chr7 (149428916-149429144) | |
| 1-277, gnl|rheMac2|chr8 (147581014-147581242) | |
| 1-277, gnl|rn3|chr7 (115015137-115015365) | |
| 1-277, gnl|tetNig1|chrUn_random (86845869-86845641) | |
| 1-277, gnl|xenTro1|scaffold_450 (951984-952212) | |
| 4-269, gnl|bosTau2|chr10 (8996524-8996258) | |
| 4-269, gnl|Hg17|chr19 (42818329-42817979) | |
| 4-269, gnl|Mm7|chr2 (127309955-127309689) | |
| 441-788, gnl|bosTau2|chr23 (25658162-25658509) | |
| 441-788, gnl|Hg17|chr6 (28405404-28405057) | |
| 441-788, gnl|Mm7|chr13 (20778075-20778391) | |
| 484-780, gnl|bosTau2|chr22 (12485123-12484827) | |
| 484-780, gnl|canFam2|chr23 (4829376-4828760) | |
| 484-780, gnl|dasNov1|scaffold_15897 (9659-10264) | |
| 484-780, gnl|echTel1|scaffold_280817 (80332-80899) | |
| 484-780, gnl|hg17|chr3 (44573469-44574084) | |
| 484-780, gnl|Hg17|chr3 (44573667-44573963) | |
| 484-780, gnl|loxAfr1|scaffold_6370 (30143-29568) | |
| 484-780, gnl|mm7|chr9 (122593866-122594464) | |
| 484-780, gnl|Mm7|chr9 (122594053-122594344) | |
| 484-780, gnl|monDom2|scaffold_5 (78567872-78567282) | |
| 484-780, gnl|oryCun1|scaffold_141480 (1218-1816) | |
| 484-780, gnl|panTro1|chr2 (45862110-45862725) | |
| 484-780, gnl|rheMac2|chr2 (91982368-91981759) | |
| 484-780, gnl|rn3|chr8 (127613153-127613750) | |
| 511-779, gnl|bosTau2|chr19 (14951296-14951028) | |
| 511-779, gnl|Hg17|chr17 (4953685-4953420) | |
| 511-779, gnl|Mm7|chr5 (137070879-137071147) | |
| 517-685, gnl|bosTau2|chr13 (46206190-46206358) | |
| 517-685, gnl|canFam2|chr24 (27793270-27793767) | |
| 517-685, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 517-685, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 517-685, gnl|hg17|chr20 (34005015-34005511) | |
| 517-685, gnl|Hg17|chr20 (34005302-34005134) | |
| 517-685, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 517-685, gnl|mm7|chr2 (156052753-156053103) | |
| 517-685, gnl|Mm7|chr2 (156052999-156052831) | |
| 517-685, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 517-685, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 517-685, gnl|panTro1|chr21 (36225996-36226492) | |
| 517-685, gnl|rheMac2|chr10 (28569615-28569119) | |
| 517-685, gnl|rn3|chr3 (146616106-146616456) | |
| 932-1047, gnl|bosTau2|chr23 (25625768-25625877) | |
| 932-1047, gnl|canFam2|chr35 (28547628-28547755) | |
| 932-1047, gnl|dasNov1|scaffold_56672 (4400-4282) | |
| 932-1047, gnl|echTel1|scaffold_246903 (11152-11296) | |
| 932-1047, gnl|fr1|chrUn (150316304-150316195) | |
| 932-1047, gnl|galGal2|chr18 (20220-20066) | |
| 932-1047, gnl|hg17|chr6 (28467372-28467504) | |
| 932-1047, gnl|Hg17|chr6 (28467498-28467389) | |
| 932-1047, gnl|loxAfr1|scaffold_53283 (3479-3347) | |
| 932-1047, gnl|mm7|chr13 (20734666-20734537) | |
| 932-1047, gnl|Mm7|chr13 (20734541-20734648) | |
| 932-1047, gnl|monDom2|scaffold_218 (622577-622739) | |
| 932-1047, gnl|oryCun1|scaffold_200697 (51279-51411) | |
| 932-1047, gnl|panTro1|chr5 (28938548-28938680) | |
| 932-1047, gnl|rheMac2|chr4 (28122906-28123038) | |
| 932-1047, gnl|rn3|chr17 (50896861-50896990) | |
| 932-1047, gnl|xenTro1|scaffold_634 (488729-488813) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-277, gnl|bosTau2|chr14 (3080021-3079745) | |
| 1-277, gnl|canFam2|chr13 (41193224-41193452) | |
| 1-277, gnl|danRer3|chr24 (2438400-2438175) | |
| 1-277, gnl|dasNov1|scaffold_187656 (1041-1269) | |
| 1-277, gnl|echTel1|scaffold_263108 (4003-3775) | |
| 1-277, gnl|fr1|chrUn (150325777-150325546) | |
| 1-277, gnl|galGal2|chr18 (22932-22663) | |
| 1-277, gnl|hg17|chr8 (146126980-146127208) | |
| 1-277, gnl|Hg17|chr8 (146127286-146127010) | |
| 1-277, gnl|loxAfr1|scaffold_20757 (43342-43570) | |
| 1-277, gnl|mm7|chr15 (77016797-77016999) | |
| 1-277, gnl|monDom2|scaffold_79 (4467318-4467090) | |
| 1-277, gnl|oryCun1|scaffold_199636 (36059-35831) | |
| 1-277, gnl|panTro1|chr7 (149428916-149429144) | |
| 1-277, gnl|rheMac2|chr8 (147581014-147581242) | |
| 1-277, gnl|rn3|chr7 (115015137-115015365) | |
| 1-277, gnl|tetNig1|chrUn_random (86845869-86845641) | |
| 1-277, gnl|xenTro1|scaffold_450 (951984-952212) | |
| 4-269, gnl|bosTau2|chr10 (8996524-8996258) | |
| 4-269, gnl|Hg17|chr19 (42818329-42817979) | |
| 4-269, gnl|Mm7|chr2 (127309955-127309689) | |
| 441-788, gnl|bosTau2|chr23 (25658162-25658509) | |
| 441-788, gnl|Hg17|chr6 (28405404-28405057) | |
| 441-788, gnl|Mm7|chr13 (20778075-20778391) | |
| 484-780, gnl|bosTau2|chr22 (12485123-12484827) | |
| 484-780, gnl|canFam2|chr23 (4829376-4828760) | |
| 484-780, gnl|dasNov1|scaffold_15897 (9659-10264) | |
| 484-780, gnl|echTel1|scaffold_280817 (80332-80899) | |
| 484-780, gnl|hg17|chr3 (44573469-44574084) | |
| 484-780, gnl|Hg17|chr3 (44573667-44573963) | |
| 484-780, gnl|loxAfr1|scaffold_6370 (30143-29568) | |
| 484-780, gnl|mm7|chr9 (122593866-122594464) | |
| 484-780, gnl|Mm7|chr9 (122594053-122594344) | |
| 484-780, gnl|monDom2|scaffold_5 (78567872-78567282) | |
| 484-780, gnl|oryCun1|scaffold_141480 (1218-1816) | |
| 484-780, gnl|panTro1|chr2 (45862110-45862725) | |
| 484-780, gnl|rheMac2|chr2 (91982368-91981759) | |
| 484-780, gnl|rn3|chr8 (127613153-127613750) | |
| 511-779, gnl|bosTau2|chr19 (14951296-14951028) | |
| 511-779, gnl|Hg17|chr17 (4953685-4953420) | |
| 511-779, gnl|Mm7|chr5 (137070879-137071147) | |
| 517-685, gnl|bosTau2|chr13 (46206190-46206358) | |
| 517-685, gnl|canFam2|chr24 (27793270-27793767) | |
| 517-685, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 517-685, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 517-685, gnl|hg17|chr20 (34005015-34005511) | |
| 517-685, gnl|Hg17|chr20 (34005302-34005134) | |
| 517-685, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 517-685, gnl|mm7|chr2 (156052753-156053103) | |
| 517-685, gnl|Mm7|chr2 (156052999-156052831) | |
| 517-685, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 517-685, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 517-685, gnl|panTro1|chr21 (36225996-36226492) | |
| 517-685, gnl|rheMac2|chr10 (28569615-28569119) | |
| 517-685, gnl|rn3|chr3 (146616106-146616456) | |
| 932-1047, gnl|bosTau2|chr23 (25625768-25625877) | |
| 932-1047, gnl|canFam2|chr35 (28547628-28547755) | |
| 932-1047, gnl|dasNov1|scaffold_56672 (4400-4282) | |
| 932-1047, gnl|echTel1|scaffold_246903 (11152-11296) | |
| 932-1047, gnl|fr1|chrUn (150316304-150316195) | |
| 932-1047, gnl|galGal2|chr18 (20220-20066) | |
| 932-1047, gnl|hg17|chr6 (28467372-28467504) | |
| 932-1047, gnl|Hg17|chr6 (28467498-28467389) | |
| 932-1047, gnl|loxAfr1|scaffold_53283 (3479-3347) | |
| 932-1047, gnl|mm7|chr13 (20734666-20734537) | |
| 932-1047, gnl|Mm7|chr13 (20734541-20734648) | |
| 932-1047, gnl|monDom2|scaffold_218 (622577-622739) | |
| 932-1047, gnl|oryCun1|scaffold_200697 (51279-51411) | |
| 932-1047, gnl|panTro1|chr5 (28938548-28938680) | |
| 932-1047, gnl|rheMac2|chr4 (28122906-28123038) | |
| 932-1047, gnl|rn3|chr17 (50896861-50896990) | |
| 932-1047, gnl|xenTro1|scaffold_634 (488729-488813) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |