Non-Coding RNA Search

Ss1.1-Pig4-TMW8047B14.3

Sequence:


               
               GGCGACCATGGCGGGAGGAATGAAAGTGGCGGTCTTGCCGGCAGTTGGTTCCGGGCCCTG
GAGTTGGCGGTCCGGGGGCTGTGGGGCAGTGTGGCTGCTCCTGGTCCTTTCCGGCTGCTT
GGTCTGCGGCTCAGCCGGAATTGATTTAAAGGTGGTCATGCTTCAGGAATCCAAAGTTTA
TTGTATGAATACCAGTCAACAATCCTGTTATAAAAATGTGCTTATCCCAAAGTGGCATGA
TGTATGGACACGGATTCAGATCCGGGTGAATAGTTCCAAACTGGTGCGAGTCACCCAGGT
GGAGAATGAAGAGAAACTGAAGGAGCTAGAGCAGTTTAGTATCTGGAACTTTTTTTCCTC
CTTTTTAAAAGAGAAATTGAATGACACCTATGTTAATGTGGGTCTATACAGCACAAAAAC
CTGCCTCAAAGTTGAGATTATAGAGGAAGACACCAAGTACAGTGTCACTGTGACCCGGAG
ATTTGACCCCAAACTCTTCCTCATTTTCCTTCTTGGACTTACGCTATTTTTTTGTGGAGA
CTTGCTGAGCAGAAGTCAAATCTTTTACTATTCCACTGGGATGAGTGTAGGAATTGTGGC
CTCTCTACTAATCATCATTTTCATACTGTCCAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGACCATGGCGGGAGGAATGAAAGTGGCGGTCTTGCCGGCAGTTGGTTCCGGGCCCTG
GAGTTGGCGGTCCGGGGGCTGTGGGGCAGTGTGGCTGCTCCTGGTCCTTTCCGGCTGCTT
GGTCTGCGGCTCAGCCGGAATTGATTTAAAGGTGGTCATGCTTCAGGAATCCAAAGTTTA
TTGTATGAATACCAGTCAACAATCCTGTTATAAAAATGTGCTTATCCCAAAGTGGCATGA
TGTATGGACACGGATTCAGATCCGGGTGAATAGTTCCAAACTGGTGCGAGTCACCCAGGT
GGAGAATGAAGAGAAACTGAAGGAGCTAGAGCAGTTTAGTATCTGGAACTTTTTTTCCTC
CTTTTTAAAAGAGAAATTGAATGACACCTATGTTAATGTGGGTCTATACAGCACAAAAAC
CTGCCTCAAAGTTGAGATTATAGAGGAAGACACCAAGTACAGTGTCACTGTGACCCGGAG
ATTTGACCCCAAACTCTTCCTCATTTTCCTTCTTGGACTTACGCTATTTTTTTGTGGAGA
CTTGCTGAGCAGAAGTCAAATCTTTTACTATTCCACTGGGATGAGTGTAGGAATTGTGGC
CTCTCTACTAATCATCATTTTCATACTGTCCAAGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|30424569|ref|NP_776093.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|30424569|ref|NP_776093.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               257-375, + strand, RNAz p=0.619924

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-375, + strand, RNAz p=0.619924

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               257-480, gnl|bosTau2|chr5 (32617961-32618184)
               

               
               257-480, gnl|Hg17|chr12 (55750946-55750723)
               

               
               257-480, gnl|Mm7|chr10 (127190610-127190833)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               257-480, gnl|bosTau2|chr5 (32617961-32618184)
               

               
               257-480, gnl|Hg17|chr12 (55750946-55750723)
               

               
               257-480, gnl|Mm7|chr10 (127190610-127190833)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bla (0.124347)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	257-480, gnl\|bosTau2\|chr5 (32617961-32618184)
	257-480, gnl\|Hg17\|chr12 (55750946-55750723)
	257-480, gnl\|Mm7\|chr10 (127190610-127190833)