Non-Coding RNA Search

Ss1.1-Pig4-TMW8047C07.5

Sequence:


               
               GGAAATGGCTATTGCATTTCACTCTAATGCTGAAAAGATTTTGCAAGACTGTCCAGAAGA
GCCTGAAGCTATTAATGATGAGGAGCAATTTGATGAAATTGAAGCAGTTGGGAAATCACT
TTTAGATAGACTAACTGTTCCTGTAGTTTATCCCGATGGAACTGAACAGTATTTTGGGAG
TCCAAGTGACATGGCTTCTACTGCAGAACACATCAGAGACAGGATGAAACTAGTTAGTCT
CAAAAGGCAGCAGCTGAGACATCCCGAAATGATGGCTACGGAGAGCTAATAGCTGCCTTC
TTTCCCCAGATCTGCAGTTCACAGTCCCGCATGGAGTCGGCATACTACAACATGAGCTAC
GATACTTTTAAGATGCATTTCACAGCCAGGATAAGCCTCATTTCTTTCCATTACACATTT
CTCTCCACATGTTAAAACCTTGTTACTACCAAGGCATAATTATGTAACATACTTTGAGAC
CATAGACTCCAAGTATCTTAAAAGAAAGAACTGTAAACATTGCACTGAAAACTTGCTTTA
AAGCTTTACCTGACCTGTCAGTTTGTAGATGAACAACTGATAATAAGCTTTGAATGGTGC
TAATAAGAGTTTAGGAATTCTCTATGTAAGAAATGATTGCCCCTCCTCCCCAGGTGATGT
AGTAAATTTAGACTATAGTTAAACTGTTACTAGTAGGTAGTGGTGTCCTCAAAATTTTAC
TTTGTAATTCTTCACAACTGATTATTTTTATTGTGTCAGTATGAAGGAAAGGTTCAGATT
TTTGATATATTCATTAAAAGGCATTTTTTATTTGTTTTGATAATGTATTAAAAGTTGTTT
GTGCTTAATAAAAGACTTCTTTTAAACATCTTATTTAATTTGGTGGTTACATCCTGTTTC
CAAACATGAGTGCCTTATTTAAAATGGCATTCTTAGGATTGTGAGGATGGTTTAGTATTT
GTTTTTTCATGTTGGTTGCATGTGTTTTAGCCAGGAGATTCATATGTAAGCATGTATATA
TAATAAATAAGCATGTTTTATCATGGAAAATAATTGTGAAGAACAATTTAGATCTTTAAG
AACTTATGAATAATGGAATTATTTCTAATTTTTCTCTTCCTCAACTTGAAAAATGTTATG
CAAATTATTTACTACTTTGAAGATATTTTGTTTTGGGGGGAGGAGGGCTAGGGAAGAAGG
CATACATAGTTACTTAGGTGTAATCCTTTATATCAGAGTAATCTTTCTCAGACTAAAATA
GCAATTGTTAATAAAATGTAATTTCTCATGATAGATTAGAAGCAAGATTCTGAAGTAGTA
TAACAAAAATTATACAACTCTTTTAGAAATAAAATTTGTAAAATGTTAGTGCTTTTAAGT
TTATATTAAGTTTAAGTGAAAAAATTTCATATAATGTGTTAATTTTTATTTCAGAAAATG
TTTTGAGAAAGATTAAAAATAATTTTGTAGTCTGTGATCAATACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATGGCTATTGCATTTCACTCTAATGCTGAAAAGATTTTGCAAGACTGTCCAGAAGA
GCCTGAAGCTATTAATGATGAGGAGCAATTTGATGAAATTGAAGCAGTTGGGAAATCACT
TTTAGATAGACTAACTGTTCCTGTAGTTTATCCCGATGGAACTGAACAGTATTTTGGGAG
TCCAAGTGACATGGCTTCTACTGCAGAACACATCAGAGACAGGATGAAACTAGTTAGTCT
CAAAAGGCAGCAGCTGAGACATCCCGAAATGATGGCTACGGAGAGCTAATAGCTGCCTTC
TTTCCCCAGATCTGCAGTTCACAGTCCCGCATGGAGTCGGCATACTACAACATGAGCTAC
GATACTTTTAAGATGCATTTCACAGCCAGGATAAGCCTCATTTCTTTCCATTACACATTT
CTCTCCACATGTTAAAACCTTGTTACTACCAAGGCATAATTATGTAACATACTTTGAGAC
CATAGACTCCAAGTATCTTAAAAGAAAGAACTGTAAACATTGCACTGAAAACTTGCTTTA
AAGCTTTACCTGACCTGTCAGTTTGTAGATGAACAACTGATAATAAGCTTTGAATGGTGC
TAATAAGAGTTTAGGAATTCTCTATGTAAGAAATGATTGCCCCTCCTCCCCAGGTGATGT
AGTAAATTTAGACTATAGTTAAACTGTTACTAGTAGGTAGTGGTGTCCTCAAAATTTTAC
TTTGTAATTCTTCACAACTGATTATTTTTATTGTGTCAGTATGAAGGAAAGGTTCAGATT
TTTGATATATTCATTAAAAGGCATTTTTTATTTGTTTTGATAATGTATTAAAAGTTGTTT
GTGCTTAATAAAAGACTTCTTTTAAACATCTTATTTAATTTGGTGGTTACATCCTGTTTC
CAAACATGAGTGCCTTATTTAAAATGGCATTCTTAGGATTGTGAGGATGGTTTAGTATTT
GTTTTTTCATGTTGGTTGCATGTGTTTTAGCCAGGAGATTCATATGTAAGCATGTATATA
TAATAAATAAGCATGTTTTATCATGGAAAATAATTGTGAAGAACAATTTAGATCTTTAAG
AACTTATGAATAATGGAATTATTTCTAATTTTTCTCTTCCTCAACTTGAAAAATGTTATG
CAAATTATTTACTACTTTGAAGATATTTTGTTTTGGGGGGAGGAGGGCTAGGGAAGAAGG
CATACATAGTTACTTAGGTGTAATCCTTTATATCAGAGTAATCTTTCTCAGACTAAAATA
GCAATTGTTAATAAAATGTAATTTCTCATGATAGATTAGAAGCAAGATTCTGAAGTAGTA
TAACAAAAATTATACAACTCTTTTAGAAATAAAATTTGTAAAATGTTAGTGCTTTTAAGT
TTATATTAAGTTTAAGTGAAAAAATTTCATATAATGTGTTAATTTTTATTTCAGAAAATG
TTTTGAGAAAGATTAAAAATAATTTTGTAGTCTGTGATCAATACAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               198-317, - strand, RNAz p=0.748208
               

               
               852-971, - strand, RNAz p=0.80951

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.748208
               

               
               852-971, - strand, RNAz p=0.80951

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               159-1488, gnl|bosTau2|chr2 (8763295-8764612)
               

               
               159-1488, gnl|Hg17|chr2 (179800262-179798908)
               

               
               159-1488, gnl|Mm7|chr2 (77030977-77029682)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-1488, gnl|bosTau2|chr2 (8763295-8764612)
               

               
               159-1488, gnl|Hg17|chr2 (179800262-179798908)
               

               
               159-1488, gnl|Mm7|chr2 (77030977-77029682)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               lyg (0.399308)
               

               
               ski (0.29347)
               

               
               sug (0.254582)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               ski (0.29347)
               

               
               sug (0.254582)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	198-317, - strand, RNAz p=0.748208
	852-971, - strand, RNAz p=0.80951

	159-1488, gnl\|bosTau2\|chr2 (8763295-8764612)
	159-1488, gnl\|Hg17\|chr2 (179800262-179798908)
	159-1488, gnl\|Mm7\|chr2 (77030977-77029682)

	lyg (0.399308)
	ski (0.29347)
	sug (0.254582)
	aor (0.195274)
	mgm (0.180343)
	nje (0.16592)
	fco (0.157208)
	fat (0.147427)
	lin (0.145603)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	med (0.116252)
	spc (0.113366)