Non-Coding RNA Search

Ss1.1-Pig4-TMW8047C14.3

Sequence:


               
               GTGGATCTTGGACAGCCAGTAAAGAATAAGAAAATCTTAAAAGAAAAGTCATCAGAATTT
GATGTGAGGGCTTTCTGCAAACAGCTGAAACACAAAGCTATGCAGGAGACCAGTGTTGCA
TTTAAATGTTCTCAAGCCAAACTAATGGCAACCAAACATTCTTCTCAGAAAGCAATAGGA
ACTTGCATAAAAAGTTTTGTGCAAAGATTCCGAGAGGCTGACACTTTCAGACAACTTTCT
GAAGAAATCCAAACGGCAATTCTGTGGTGTAGGAGCAAAAAACTCAAGGCCCAGACTGCC
TTTCTGGGTAATAAACTTCTTAAAAGTAACCGGCTTAAACATTTGGAAGCTCAAGGCTAC
AGTTTGCCAAAGAAACTAGAGTGCATAAAAACCTCTATTTGCAACTGCCTTCTTCATGGC
TCAGGTATCAAAACTTCAAAGCATCGTCTGAGACAAAGAAGATCACAGAATAAATTTTCA
CTGAGACAAAGGAAACCACAGAGAAAGTTACAGTCAATTCTTTCAAAGGAAATCCAGCAG
TCCCCTAAAGGGACCCAGAGTGCTACAGACATCTTTAAAGGAAGACTCTCACACCCTGCA
GTTCATAGAACTGATCTCTACCCTAACAAGCAGCAACTCCTGAGTACAGGAGTTTCAAAT
CCTTTCATACAAACCAAGGAGGAACAAACTCATGAAAATCTTAGAGGAAGCAATGAAAAT
GAAAGGACAATGATGCAAACAAATAAACATAATACATTAGGAACCATTCAGACAGATGAC
ATTGATGATATTTTTGCTTTAATGGGTGTTTAGATGCTTTTATATGACTCTTAAGTGATT
AACCAGCTGATCCAGTGTTCTGCTGTTGTAAGTAGAATAGCTGAGGTCTGGAAAGATCTG
GAAAGTACCATTTGGACTCAGAGGAGCTGCGTTGGTGCAACATTGTACAGCAGTTCATTT
CAGTTCAATAAACATTTATCATAGCTTTGTGTTATTTAATATTTGACTATTAAATAGTCA
AATTTTGACTTAAGACGTGAAGAATTAGGTTTAAAAAACCTACTCTGTGCCTTCAGTAAA
TGGGGAGTGGGGGTTGGGAATAGCAAGGACCCATCATTTTAAAGTTTCCTTTTCTTTATC
TGGCCATTTCCTTGTCTGCTTTCTGTAGGTTTTCTCACTTACCTATTGTACCAGTGGTTC
TCAAATTGTATGCTATTTTGAGAATCACTTGGGTTGTTTAAAAATGCAGATTGAGTCCTT
TCCAAAGAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGATCTTGGACAGCCAGTAAAGAATAAGAAAATCTTAAAAGAAAAGTCATCAGAATTT
GATGTGAGGGCTTTCTGCAAACAGCTGAAACACAAAGCTATGCAGGAGACCAGTGTTGCA
TTTAAATGTTCTCAAGCCAAACTAATGGCAACCAAACATTCTTCTCAGAAAGCAATAGGA
ACTTGCATAAAAAGTTTTGTGCAAAGATTCCGAGAGGCTGACACTTTCAGACAACTTTCT
GAAGAAATCCAAACGGCAATTCTGTGGTGTAGGAGCAAAAAACTCAAGGCCCAGACTGCC
TTTCTGGGTAATAAACTTCTTAAAAGTAACCGGCTTAAACATTTGGAAGCTCAAGGCTAC
AGTTTGCCAAAGAAACTAGAGTGCATAAAAACCTCTATTTGCAACTGCCTTCTTCATGGC
TCAGGTATCAAAACTTCAAAGCATCGTCTGAGACAAAGAAGATCACAGAATAAATTTTCA
CTGAGACAAAGGAAACCACAGAGAAAGTTACAGTCAATTCTTTCAAAGGAAATCCAGCAG
TCCCCTAAAGGGACCCAGAGTGCTACAGACATCTTTAAAGGAAGACTCTCACACCCTGCA
GTTCATAGAACTGATCTCTACCCTAACAAGCAGCAACTCCTGAGTACAGGAGTTTCAAAT
CCTTTCATACAAACCAAGGAGGAACAAACTCATGAAAATCTTAGAGGAAGCAATGAAAAT
GAAAGGACAATGATGCAAACAAATAAACATAATACATTAGGAACCATTCAGACAGATGAC
ATTGATGATATTTTTGCTTTAATGGGTGTTTAGATGCTTTTATATGACTCTTAAGTGATT
AACCAGCTGATCCAGTGTTCTGCTGTTGTAAGTAGAATAGCTGAGGTCTGGAAAGATCTG
GAAAGTACCATTTGGACTCAGAGGAGCTGCGTTGGTGCAACATTGTACAGCAGTTCATTT
CAGTTCAATAAACATTTATCATAGCTTTGTGTTATTTAATATTTGACTATTAAATAGTCA
AATTTTGACTTAAGACGTGAAGAATTAGGTTTAAAAAACCTACTCTGTGCCTTCAGTAAA
TGGGGAGTGGGGGTTGGGAATAGCAAGGACCCATCATTTTAAAGTTTCCTTTTCTTTATC
TGGCCATTTCCTTGTCTGCTTTCTGTAGGTTTTCTCACTTACCTATTGTACCAGTGGTTC
TCAAATTGTATGCTATTTTGAGAATCACTTGGGTTGTTTAAAAATGCAGATTGAGTCCTT
TCCAAAGAGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51476408|emb|CAH18194.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51476408|emb|CAH18194.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               853-1009, + strand, RNAz p=0.999928

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               853-1009, + strand, RNAz p=0.999928

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               358-1101, gnl|bosTau2|chr1 (33436712-33437457)
               

               
               358-1101, gnl|Hg17|chr3 (114207546-114206675)
               

               
               358-1101, gnl|Mm7|chr16 (44513239-44513921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               358-1101, gnl|bosTau2|chr1 (33436712-33437457)
               

               
               358-1101, gnl|Hg17|chr3 (114207546-114206675)
               

               
               358-1101, gnl|Mm7|chr16 (44513239-44513921)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eye (0.341006)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	358-1101, gnl\|bosTau2\|chr1 (33436712-33437457)
	358-1101, gnl\|Hg17\|chr3 (114207546-114206675)
	358-1101, gnl\|Mm7\|chr16 (44513239-44513921)

	eye (0.341006)
	lnt (0.142308)
	ssp (0.13552)
	thg (0.126791)
	ldo (0.0970026)