Non-Coding RNA Search

Ss1.1-Pig4-TMW8047D05.3

Sequence:


               
               AAACAGCCCTTCTAATTCAGAACCCCAGCATAGGGGTTTCTGGAAGCCAGTAGACAGAAC
TGGGGAGGGAATTCCCTCTGGCCAGCCTGGCCCCTGCCTTTGCCTTCTTCAGAGTCTGAG
CTGCTGGAGAGCTGGCCCTGTGGCCTTTTTCCTGCTCAGTCTGAGAAAAATATCACCTCC
CAGTGCCCTCCATGAGCCCCTAAGGAAGTGGGTCTGTGGTGGGGGCTTATGTGGCAGGCA
TGTTCCAAGTGCTCAGAGGGGCCTGCTGACTTGTCTTTCTGTCCCCAGCAACCCAGCCCC
ATCCAAGGGTGGGTCTGGCCTGGGTATGGCAGGGAAGGGGTTGTTGGGGATAGTCCAGCC
AGGGCCTCCACTGGAGTCTGGGGGAGCCACTGTGACTTTCCTGGTCAGCAAGGAGCACGC
TGAGAACTTGAGAGCTTGTCTCATTTGAGGGGATTTGATAAAGTGGAATAGGGGGTGTGG
AGAGCAGCAGAAGCAGGTGCTTCGGATGCTGTGGGCTCTGTGGGGTTTCTGCAAACCAGT
GCTGCAGCCCAGGCCAGTGGAAGCTTTGGAGCCCTCTGTGTGTAGGCGGGGACTCCTTGG
TGAGAGACCATGCTGGCCAGACTCGTTCCGGCAAGGAGTTAACCCGTCAGCCGGTGAAGC
CTCTGGGGAAGCTGTGGGTAGTTGGCACTTCAGGGCTGGTGGGGACTATGAGCCTTGAAG
GAATAGAGAAAGCTGTGCTCTTCCACAGATGTGTCAGCTTCTGGGGCTGAAGGTGCTCAG
GCCCATGCAGGCTTCTGTCTGCATAGCCTCAATCTCTGCACAGGAGCCAGCGCCTCTCCC
TGCTCTGAGAGCATTGCCCACCGGGCTGCCCCCATCCCTGGGTCCGCAGGGACTGCCAGG
GGGAGACCCAGTGAGAATGTAGCATTTTGTCCACCCCAGATTAGCTGTCCTGGGTTCTAG
GCCTTCCGCCTCTGGAGGAGAAACAGGAGAGAGGGGGAGGGGATAGGAACCCATTGTTTT
TAAACCTGTACAGAATATTTGGCTTTATGTTTTTCACATGCATATATGTGTGTGTATCTT
TTCCCCATCAATTGGTACAATTTTTAATAAAACCATTTAAAGCAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAGCCCTTCTAATTCAGAACCCCAGCATAGGGGTTTCTGGAAGCCAGTAGACAGAAC
TGGGGAGGGAATTCCCTCTGGCCAGCCTGGCCCCTGCCTTTGCCTTCTTCAGAGTCTGAG
CTGCTGGAGAGCTGGCCCTGTGGCCTTTTTCCTGCTCAGTCTGAGAAAAATATCACCTCC
CAGTGCCCTCCATGAGCCCCTAAGGAAGTGGGTCTGTGGTGGGGGCTTATGTGGCAGGCA
TGTTCCAAGTGCTCAGAGGGGCCTGCTGACTTGTCTTTCTGTCCCCAGCAACCCAGCCCC
ATCCAAGGGTGGGTCTGGCCTGGGTATGGCAGGGAAGGGGTTGTTGGGGATAGTCCAGCC
AGGGCCTCCACTGGAGTCTGGGGGAGCCACTGTGACTTTCCTGGTCAGCAAGGAGCACGC
TGAGAACTTGAGAGCTTGTCTCATTTGAGGGGATTTGATAAAGTGGAATAGGGGGTGTGG
AGAGCAGCAGAAGCAGGTGCTTCGGATGCTGTGGGCTCTGTGGGGTTTCTGCAAACCAGT
GCTGCAGCCCAGGCCAGTGGAAGCTTTGGAGCCCTCTGTGTGTAGGCGGGGACTCCTTGG
TGAGAGACCATGCTGGCCAGACTCGTTCCGGCAAGGAGTTAACCCGTCAGCCGGTGAAGC
CTCTGGGGAAGCTGTGGGTAGTTGGCACTTCAGGGCTGGTGGGGACTATGAGCCTTGAAG
GAATAGAGAAAGCTGTGCTCTTCCACAGATGTGTCAGCTTCTGGGGCTGAAGGTGCTCAG
GCCCATGCAGGCTTCTGTCTGCATAGCCTCAATCTCTGCACAGGAGCCAGCGCCTCTCCC
TGCTCTGAGAGCATTGCCCACCGGGCTGCCCCCATCCCTGGGTCCGCAGGGACTGCCAGG
GGGAGACCCAGTGAGAATGTAGCATTTTGTCCACCCCAGATTAGCTGTCCTGGGTTCTAG
GCCTTCCGCCTCTGGAGGAGAAACAGGAGAGAGGGGGAGGGGATAGGAACCCATTGTTTT
TAAACCTGTACAGAATATTTGGCTTTATGTTTTTCACATGCATATATGTGTGTGTATCTT
TTCCCCATCAATTGGTACAATTTTTAATAAAACCATTTAAAGCAAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               880-997, - strand, RNAz p=0.826647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               880-997, - strand, RNAz p=0.826647

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               572-1126, gnl|bosTau2|chr10 (23202446-23202988)
               

               
               572-1126, gnl|Hg17|chr15 (38167898-38167383)
               

               
               572-1126, gnl|Mm7|chr2 (118270115-118269606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               572-1126, gnl|bosTau2|chr10 (23202446-23202988)
               

               
               572-1126, gnl|Hg17|chr15 (38167898-38167383)
               

               
               572-1126, gnl|Mm7|chr2 (118270115-118269606)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cut (0.169924)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	572-1126, gnl\|bosTau2\|chr10 (23202446-23202988)
	572-1126, gnl\|Hg17\|chr15 (38167898-38167383)
	572-1126, gnl\|Mm7\|chr2 (118270115-118269606)

	cut (0.169924)
	cag (0.151194)
	che (0.136314)
	cly (0.120642)
	med (0.116252)
	cty (0.10408)