Ss1.1-Pig4-TMW8047D09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGGCGTGGCCTGGGCGGGGCGTGGGTCAAAAGGGCTTCCGAGAAGCTTTGCCGGATGC CTGCTTGGCTTGCGCTGCATTGGTGTGTGAGACGATGCGGAAGGTGGTACTGATCACCGG GGCTAGCAGTGGCGTTGGCCTAGCCCTCTGCAGGCGGTTGCTGAAGGAAGACGATGGACT TCACCTGTGCTTGGCCTGCAGGAATTTGAGTAAAGCGGAGGCTGTCCGTGCTTCTCTGCT TGCCTCCCACCCTGACGCCGAGGTCACCACTGTGCAAGTGGATGTCAGCAGCTTGTCATC GGTGTTCCGGGCCTCCAAAGAGCTCAAGGAAAGGTTTCAGAGATTAGACTATGTATATCT GAATGCTGGGATCATGCCTAATCCACAGCTAAATATAAAAGCACTTTTCTGTAGCCTGTT TTCAAGAAAAGCGATTCATGTGTTCTCCACAGCTGAAGGACTGTTGACCCAGAATGACAA GATCACTGCTGATGGGCTCCAGGAGGTGTTTGAAACCAATATCTTTGGCCACTTTATCCT GATTCGGGAACTGGAATCTCTTCTGTGCCACAGTGACAGTCCATCTCAGCTCATTTGGAC ATCATCCCGCAATGCAAGGAAATCTAATTTCAGCCTTGAGGACATCCAGCACAGCAAAGG CCAGGAGCCCTACAGCTCTTCCAAATATGCTATAGACCTTCTGAGTGTGGCTTTGAACCG GAAATTTAACCAGCGGGGTTTATATTCCAGTGTGGTGTGTCCAGGGACCATGTTGACCAA CTTGACATATGGAATTTTATCTCCTTTTATGTGGATGCTGATCATGCCAATGATATGGCT GTTGCGCTTTTTTGCAAATGCTTTCACTTTGACACCGTACAATGGAACAGAAGCACTGGT CTGGCTTTTCCACCAAAAGCCTGAGTCTCTCAATCCTCTGGTGAAATATCTGAGTGCCAC CACTGGTTTTGGCAGCAATTACGTAACGTCCAAAAAGATGGACCTAGATGAAGACACTGC TGAAAAATGTTACCAAAACTTACTGGAACTGGAAAAGCATGTCAGGGTTCCCATTAAAAA AACTGATAACCAGAGTTGATGATGAGGCTCTCTGAACCCTTTAATACCGTCTGTGGATTC TGGAGCATGTTGGTTTCTACTGAGGGGGATGATACGCATTTGTGGTAAATTATGAACTCT GATAGTCTCTTCCTTCATTTCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGGCGTGGCCTGGGCGGGGCGTGGGTCAAAAGGGCTTCCGAGAAGCTTTGCCGGATGC CTGCTTGGCTTGCGCTGCATTGGTGTGTGAGACGATGCGGAAGGTGGTACTGATCACCGG GGCTAGCAGTGGCGTTGGCCTAGCCCTCTGCAGGCGGTTGCTGAAGGAAGACGATGGACT TCACCTGTGCTTGGCCTGCAGGAATTTGAGTAAAGCGGAGGCTGTCCGTGCTTCTCTGCT TGCCTCCCACCCTGACGCCGAGGTCACCACTGTGCAAGTGGATGTCAGCAGCTTGTCATC GGTGTTCCGGGCCTCCAAAGAGCTCAAGGAAAGGTTTCAGAGATTAGACTATGTATATCT GAATGCTGGGATCATGCCTAATCCACAGCTAAATATAAAAGCACTTTTCTGTAGCCTGTT TTCAAGAAAAGCGATTCATGTGTTCTCCACAGCTGAAGGACTGTTGACCCAGAATGACAA GATCACTGCTGATGGGCTCCAGGAGGTGTTTGAAACCAATATCTTTGGCCACTTTATCCT GATTCGGGAACTGGAATCTCTTCTGTGCCACAGTGACAGTCCATCTCAGCTCATTTGGAC ATCATCCCGCAATGCAAGGAAATCTAATTTCAGCCTTGAGGACATCCAGCACAGCAAAGG CCAGGAGCCCTACAGCTCTTCCAAATATGCTATAGACCTTCTGAGTGTGGCTTTGAACCG GAAATTTAACCAGCGGGGTTTATATTCCAGTGTGGTGTGTCCAGGGACCATGTTGACCAA CTTGACATATGGAATTTTATCTCCTTTTATGTGGATGCTGATCATGCCAATGATATGGCT GTTGCGCTTTTTTGCAAATGCTTTCACTTTGACACCGTACAATGGAACAGAAGCACTGGT CTGGCTTTTCCACCAAAAGCCTGAGTCTCTCAATCCTCTGGTGAAATATCTGAGTGCCAC CACTGGTTTTGGCAGCAATTACGTAACGTCCAAAAAGATGGACCTAGATGAAGACACTGC TGAAAAATGTTACCAAAACTTACTGGAACTGGAAAAGCATGTCAGGGTTCCCATTAAAAA AACTGATAACCAGAGTTGATGATGAGGCTCTCTGAACCCTTTAATACCGTCTGTGGATTC TGGAGCATGTTGGTTTCTACTGAGGGGGATGATACGCATTTGTGGTAAATTATGAACTCT GATAGTCTCTTCCTTCATTTCAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 127-335, gnl|bosTau2|chr3 (6845318-6845526) | |
| 127-335, gnl|canFam2|chr38 (22997171-22996906) | |
| 127-335, gnl|canFam2|chr38 (22997170-22996923) | |
| 127-335, gnl|danRer3|chrUn (22499388-22499147) | |
| 127-335, gnl|danRer3|chrUn (22499387-22499147) | |
| 127-335, gnl|dasNov1|scaffold_4894 (44399-44662) | |
| 127-335, gnl|dasNov1|scaffold_4894 (44400-44645) | |
| 127-335, gnl|fr1|chrUn (71402135-71402354) | |
| 127-335, gnl|fr1|chrUn (45656297-45656506) | |
| 127-335, gnl|galGal2|chr8 (3737452-3737247) | |
| 127-335, gnl|galGal2|chr8 (3737452-3737247) | |
| 127-335, gnl|hg17|chr1 (159494066-159494332) | |
| 127-335, gnl|Hg17|chr1 (159494104-159494312) | |
| 127-335, gnl|hg17|chr10 (38687206-38687453) | |
| 127-335, gnl|loxAfr1|scaffold_95579 (3861-3595) | |
| 127-335, gnl|loxAfr1|scaffold_95579 (3860-3612) | |
| 127-335, gnl|mm7|chr1 (169943951-169943685) | |
| 127-335, gnl|mm7|chr1 (169943950-169943704) | |
| 127-335, gnl|Mm7|chr1 (169943912-169943704) | |
| 127-335, gnl|monDom2|scaffold_16 (12667019-12667271) | |
| 127-335, gnl|monDom2|scaffold_16 (12667019-12667253) | |
| 127-335, gnl|oryCun1|scaffold_203938 (7219-6955) | |
| 127-335, gnl|oryCun1|scaffold_203938 (7218-6971) | |
| 127-335, gnl|panTro1|chr8 (39332781-39333055) | |
| 127-335, gnl|panTro1|chr8 (39332782-39333036) | |
| 127-335, gnl|rheMac2|chr1 (141344291-141344559) | |
| 127-335, gnl|rheMac2|chr1 (141344292-141344539) | |
| 127-335, gnl|rn3|chr13 (85805604-85805338) | |
| 127-335, gnl|rn3|chr13 (85805603-85805357) | |
| 127-335, gnl|tetNig1|chr1_random (3045456-3045230) | |
| 127-335, gnl|tetNig1|chr1_random (3045456-3045230) | |
| 127-335, gnl|xenTro1|scaffold_160 (898910-899156) | |
| 127-335, gnl|xenTro1|scaffold_160 (898910-899156) | |
| 536-737, gnl|bosTau2|chr3 (6856367-6856568) | |
| 536-737, gnl|canFam2|chr38 (22987966-22987749) | |
| 536-737, gnl|canFam2|chr38 (22987966-22987757) | |
| 536-737, gnl|danRer3|chrUn (22493560-22493356) | |
| 536-737, gnl|danRer3|chrUn (22493561-22493356) | |
| 536-737, gnl|dasNov1|scaffold_4894 (54239-54455) | |
| 536-737, gnl|dasNov1|scaffold_4894 (54239-54447) | |
| 536-737, gnl|echTel1|scaffold_277344 (40897-40673) | |
| 536-737, gnl|echTel1|scaffold_277344 (40897-40681) | |
| 536-737, gnl|fr1|chrUn (71403521-71403735) | |
| 536-737, gnl|fr1|chrUn (45657102-45657293) | |
| 536-737, gnl|galGal2|chr8 (3735892-3735674) | |
| 536-737, gnl|galGal2|chr8 (3735892-3735676) | |
| 536-737, gnl|hg17|chr1 (159501183-159501400) | |
| 536-737, gnl|Hg17|chr1 (159501185-159501386) | |
| 536-737, gnl|hg17|chr10 (38694360-38694570) | |
| 536-737, gnl|loxAfr1|scaffold_8145 (8514-8293) | |
| 536-737, gnl|loxAfr1|scaffold_8145 (8514-8301) | |
| 536-737, gnl|mm7|chr1 (169937685-169937468) | |
| 536-737, gnl|mm7|chr1 (169937685-169937476) | |
| 536-737, gnl|Mm7|chr1 (169937681-169937480) | |
| 536-737, gnl|monDom2|scaffold_16 (12680188-12680397) | |
| 536-737, gnl|monDom2|scaffold_16 (12680188-12680397) | |
| 536-737, gnl|oryCun1|scaffold_75282 (1497-1293) | |
| 536-737, gnl|oryCun1|scaffold_75282 (1497-1293) | |
| 536-737, gnl|panTro1|chr8 (39340567-39340784) | |
| 536-737, gnl|panTro1|chr8 (39340567-39340776) | |
| 536-737, gnl|rheMac2|chr1 (141351471-141351688) | |
| 536-737, gnl|rheMac2|chr1 (141351471-141351680) | |
| 536-737, gnl|rn3|chr13 (85799416-85799199) | |
| 536-737, gnl|rn3|chr13 (85799416-85799207) | |
| 536-737, gnl|tetNig1|chr1_random (3044313-3044108) | |
| 536-737, gnl|tetNig1|chr1_random (3044316-3044108) | |
| 536-737, gnl|xenTro1|scaffold_160 (901220-901429) | |
| 536-737, gnl|xenTro1|scaffold_160 (901224-901429) | |
| 996-1215, gnl|bosTau2|chr3 (6871645-6871864) | |
| 996-1215, gnl|Hg17|chr1 (159513744-159514285) | |
| 996-1215, gnl|Mm7|chr1 (169929612-169929383) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 127-335, gnl|bosTau2|chr3 (6845318-6845526) | |
| 127-335, gnl|canFam2|chr38 (22997171-22996906) | |
| 127-335, gnl|canFam2|chr38 (22997170-22996923) | |
| 127-335, gnl|danRer3|chrUn (22499388-22499147) | |
| 127-335, gnl|danRer3|chrUn (22499387-22499147) | |
| 127-335, gnl|dasNov1|scaffold_4894 (44399-44662) | |
| 127-335, gnl|dasNov1|scaffold_4894 (44400-44645) | |
| 127-335, gnl|fr1|chrUn (71402135-71402354) | |
| 127-335, gnl|fr1|chrUn (45656297-45656506) | |
| 127-335, gnl|galGal2|chr8 (3737452-3737247) | |
| 127-335, gnl|galGal2|chr8 (3737452-3737247) | |
| 127-335, gnl|hg17|chr1 (159494066-159494332) | |
| 127-335, gnl|Hg17|chr1 (159494104-159494312) | |
| 127-335, gnl|hg17|chr10 (38687206-38687453) | |
| 127-335, gnl|loxAfr1|scaffold_95579 (3861-3595) | |
| 127-335, gnl|loxAfr1|scaffold_95579 (3860-3612) | |
| 127-335, gnl|mm7|chr1 (169943951-169943685) | |
| 127-335, gnl|mm7|chr1 (169943950-169943704) | |
| 127-335, gnl|Mm7|chr1 (169943912-169943704) | |
| 127-335, gnl|monDom2|scaffold_16 (12667019-12667271) | |
| 127-335, gnl|monDom2|scaffold_16 (12667019-12667253) | |
| 127-335, gnl|oryCun1|scaffold_203938 (7219-6955) | |
| 127-335, gnl|oryCun1|scaffold_203938 (7218-6971) | |
| 127-335, gnl|panTro1|chr8 (39332781-39333055) | |
| 127-335, gnl|panTro1|chr8 (39332782-39333036) | |
| 127-335, gnl|rheMac2|chr1 (141344291-141344559) | |
| 127-335, gnl|rheMac2|chr1 (141344292-141344539) | |
| 127-335, gnl|rn3|chr13 (85805604-85805338) | |
| 127-335, gnl|rn3|chr13 (85805603-85805357) | |
| 127-335, gnl|tetNig1|chr1_random (3045456-3045230) | |
| 127-335, gnl|tetNig1|chr1_random (3045456-3045230) | |
| 127-335, gnl|xenTro1|scaffold_160 (898910-899156) | |
| 127-335, gnl|xenTro1|scaffold_160 (898910-899156) | |
| 536-737, gnl|bosTau2|chr3 (6856367-6856568) | |
| 536-737, gnl|canFam2|chr38 (22987966-22987749) | |
| 536-737, gnl|canFam2|chr38 (22987966-22987757) | |
| 536-737, gnl|danRer3|chrUn (22493560-22493356) | |
| 536-737, gnl|danRer3|chrUn (22493561-22493356) | |
| 536-737, gnl|dasNov1|scaffold_4894 (54239-54455) | |
| 536-737, gnl|dasNov1|scaffold_4894 (54239-54447) | |
| 536-737, gnl|echTel1|scaffold_277344 (40897-40673) | |
| 536-737, gnl|echTel1|scaffold_277344 (40897-40681) | |
| 536-737, gnl|fr1|chrUn (71403521-71403735) | |
| 536-737, gnl|fr1|chrUn (45657102-45657293) | |
| 536-737, gnl|galGal2|chr8 (3735892-3735674) | |
| 536-737, gnl|galGal2|chr8 (3735892-3735676) | |
| 536-737, gnl|hg17|chr1 (159501183-159501400) | |
| 536-737, gnl|Hg17|chr1 (159501185-159501386) | |
| 536-737, gnl|hg17|chr10 (38694360-38694570) | |
| 536-737, gnl|loxAfr1|scaffold_8145 (8514-8293) | |
| 536-737, gnl|loxAfr1|scaffold_8145 (8514-8301) | |
| 536-737, gnl|mm7|chr1 (169937685-169937468) | |
| 536-737, gnl|mm7|chr1 (169937685-169937476) | |
| 536-737, gnl|Mm7|chr1 (169937681-169937480) | |
| 536-737, gnl|monDom2|scaffold_16 (12680188-12680397) | |
| 536-737, gnl|monDom2|scaffold_16 (12680188-12680397) | |
| 536-737, gnl|oryCun1|scaffold_75282 (1497-1293) | |
| 536-737, gnl|oryCun1|scaffold_75282 (1497-1293) | |
| 536-737, gnl|panTro1|chr8 (39340567-39340784) | |
| 536-737, gnl|panTro1|chr8 (39340567-39340776) | |
| 536-737, gnl|rheMac2|chr1 (141351471-141351688) | |
| 536-737, gnl|rheMac2|chr1 (141351471-141351680) | |
| 536-737, gnl|rn3|chr13 (85799416-85799199) | |
| 536-737, gnl|rn3|chr13 (85799416-85799207) | |
| 536-737, gnl|tetNig1|chr1_random (3044313-3044108) | |
| 536-737, gnl|tetNig1|chr1_random (3044316-3044108) | |
| 536-737, gnl|xenTro1|scaffold_160 (901220-901429) | |
| 536-737, gnl|xenTro1|scaffold_160 (901224-901429) | |
| 996-1215, gnl|bosTau2|chr3 (6871645-6871864) | |
| 996-1215, gnl|Hg17|chr1 (159513744-159514285) | |
| 996-1215, gnl|Mm7|chr1 (169929612-169929383) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pla (0.267344) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| nco (0.161734) | |
| fco (0.157208) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| nco (0.161734) | |
| fco (0.157208) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |