Ss1.1-Pig4-TMW8047D17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAACAAGAAGAAGAAGAGAGAAAGAAAAGGGAAGATGATGAAAAACGTATTCAGGCTGA GGTGGAGGCGCAGCTGGCCCGACAGCGGGAGGAGGAGTCCCAGCAGCAGGCAGTTCTGGA GCAGGAGCGCCGGGACCGGGAGCTGGCCCTGCGAATTGCCCAGAGCGAGGCAGAGCTCAT CAGTGACGAGGCGCAGGCCGACCCTGGGCTGCGCAGAGGCCCTGCTGTACAAGCCACCAA AGCGGCTGCTGGTACCAAGAAATATGATCTTAGTAAATGGAAATATGCAGAACTACGGGA TACCATCAATACTTCTTGTGATATTGAGCTCCTGGCAGCTTGCAGAGAAGAATTTCATAG GAGACTAAAAGTGTATCATGCTTGGAAATCCAAGAACAAGAAGAGAAATACTGAAACAGA GCAACGTGCTCCAAAGTCTGTTACTGATTATGCTCAGCAGAACCCAGCAGTGCAGCTCCC TGCCAGGCAGCAGGAGATCGAAATGAACCGGCAGCAGCGTTTCTTCCGCATTCCGTTCAT CCGCCCTGCGGACCAGTACAAAGACCCTCAGAATAAGAAGAAAGGCTGGTGGTATGCCCA TTTTGATGGACCGTGGATCGCCCGGCAAATGGAACTTCATCCTGACAAACCACCCATCCT CCTTGTGGCTGGTAAGGATGACATGGAGATGTGTGAGCTGAATCTTGAAGAGACAGGCCT GACTCGAAAGCGTGGTGCAGAGATTTTGCCAAGACAGTTCGAAGAAATTTGGGAACGCTG TGGAGGCATCCAGTATCTTCAGAATGCAATTGAGAGCAGACAGGCTAGGCCCACATATGC CACGGCCATGCTGCAGAACCTGTTAAAGTAGAAGTTGCACTAACCTTGCAGCTGGGAGCT CTTGCCATGGTACTGGGTAGGGAGTGTGCCCCAGACATTGACCCATTCCAGGATCCAGTT AGAGTTATGTAAACAAAGTGAACAGATTTTATTAATCATGGCTTTTTGTTAATTTAAGGT TAATTACAGTAGTGAATTGGGGACCTGAAAATTAGTTTCTTGTATCCAGCTATAACTGTT GAACCTCTCATGATTTTAATACTTGTTACACTTGGGCAGATTCTGAACCATTTCTCATTC TTTGCCAACAGACTACCTTAAATCTATCATCACTGTTCTTGAGGAAAAGAAGTTTTTTAA AAAAATGCAGATTTCTTGCTTTTTAAGAATGACACAGTACCATATAACTGGAATAAAGAA AACTTAGTTTCAGTTTTCCTACAAAACTAAGGCGCTTAAAATGATAAAGCACTGATGTTT TGATCTGAAAGCTGTGAATTTTATTCATTTTTTCAGAAATTAATGGCATTTCCGTCAAAG GTAGAAATTTTTATTTTCCTCACTCTTTTGCAGTGTTTTATTTGAGTAAAGCAATTTACC TGAAATTCTAGAATTCTGGAAGAACCTAAATGTATTTGATGCTATCTGTGACAAAGAAGG TACATAGTATCCTGCAGAGATGTGTTTTGGTTTTCTGTCACATTGTATTGCTATAAGAAT ATGTTTCATGGACAAATAAAGGAAATTCAGATCATTTAAATGCTTACAAGTTTGAGATAA CTTTGGTTTCATTTAGAAAAGGAAATAAGTTTTAGGTGGCACTGTGGCTTAACTGGACTG AATTCAAATATTCTTTCAATTTCATCTCAGTTGCAATTTTGTATCAGAATCTTGTCCAAG TTGTTTCATGTGATTTGAGCTAGTTTTCTGCTTCAAAACATCTTTGGTTTTAAAAAATTC CTGTTGTCTTTTTTTTTGGCCTTTGAGATTTTGGTAATTGTAGAGCTCTTTTATAAGCTT TGTAGTTCAAATCCCTACACTTAGGAATTGCTTGTTTCATGTAACTGATAATTTAAAAAA ATTGTTTTGTTGGTGTGCTGTTAGTTTTGCTCAAATGTCAGCAGTTTCAAGCCTAATATT TATGACTTTCATATTAGAAATTTGGAAACAAAAATACATCAAGGAGTTATGTTGACATAA TTCTAAGGAGTCTTGTTTGTATTTTAGAATAAAATTAGAAAATAAAATTATTCTCTGTAC TTCTTTCCCCCATGATTGTTAAAGACTCTAACCTTAGAAATGAATTTCCAGTGATTTTTT TTTTTTTTCCCTAGAAAGAGTACTTAGTTAGGAAAGTACTTCCCAGCTGATTGGATTAGT GCTTGTGAGTCAGACATTGTTTTCAGACCTGCTTCTCTCATGATATGTCTTAGTATAGAA ATATTTATTTATTATGATACTGAGCAGATGATTGTCTTCTGTTAAAAGAATTAAATGGTC CTGTCTGTGCTATTGAGAATGTGAACATGATTATCGTTTGAAGACTGTATTACCACATGG ACTTGCCTATGCTTGGTCATTTGGGCCCTATGATTTGGTGACAGAAGGTCTGGTTACTGA AAATAAATGACCCTTCTCCCTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAACAAGAAGAAGAAGAGAGAAAGAAAAGGGAAGATGATGAAAAACGTATTCAGGCTGA GGTGGAGGCGCAGCTGGCCCGACAGCGGGAGGAGGAGTCCCAGCAGCAGGCAGTTCTGGA GCAGGAGCGCCGGGACCGGGAGCTGGCCCTGCGAATTGCCCAGAGCGAGGCAGAGCTCAT CAGTGACGAGGCGCAGGCCGACCCTGGGCTGCGCAGAGGCCCTGCTGTACAAGCCACCAA AGCGGCTGCTGGTACCAAGAAATATGATCTTAGTAAATGGAAATATGCAGAACTACGGGA TACCATCAATACTTCTTGTGATATTGAGCTCCTGGCAGCTTGCAGAGAAGAATTTCATAG GAGACTAAAAGTGTATCATGCTTGGAAATCCAAGAACAAGAAGAGAAATACTGAAACAGA GCAACGTGCTCCAAAGTCTGTTACTGATTATGCTCAGCAGAACCCAGCAGTGCAGCTCCC TGCCAGGCAGCAGGAGATCGAAATGAACCGGCAGCAGCGTTTCTTCCGCATTCCGTTCAT CCGCCCTGCGGACCAGTACAAAGACCCTCAGAATAAGAAGAAAGGCTGGTGGTATGCCCA TTTTGATGGACCGTGGATCGCCCGGCAAATGGAACTTCATCCTGACAAACCACCCATCCT CCTTGTGGCTGGTAAGGATGACATGGAGATGTGTGAGCTGAATCTTGAAGAGACAGGCCT GACTCGAAAGCGTGGTGCAGAGATTTTGCCAAGACAGTTCGAAGAAATTTGGGAACGCTG TGGAGGCATCCAGTATCTTCAGAATGCAATTGAGAGCAGACAGGCTAGGCCCACATATGC CACGGCCATGCTGCAGAACCTGTTAAAGTAGAAGTTGCACTAACCTTGCAGCTGGGAGCT CTTGCCATGGTACTGGGTAGGGAGTGTGCCCCAGACATTGACCCATTCCAGGATCCAGTT AGAGTTATGTAAACAAAGTGAACAGATTTTATTAATCATGGCTTTTTGTTAATTTAAGGT TAATTACAGTAGTGAATTGGGGACCTGAAAATTAGTTTCTTGTATCCAGCTATAACTGTT GAACCTCTCATGATTTTAATACTTGTTACACTTGGGCAGATTCTGAACCATTTCTCATTC TTTGCCAACAGACTACCTTAAATCTATCATCACTGTTCTTGAGGAAAAGAAGTTTTTTAA AAAAATGCAGATTTCTTGCTTTTTAAGAATGACACAGTACCATATAACTGGAATAAAGAA AACTTAGTTTCAGTTTTCCTACAAAACTAAGGCGCTTAAAATGATAAAGCACTGATGTTT TGATCTGAAAGCTGTGAATTTTATTCATTTTTTCAGAAATTAATGGCATTTCCGTCAAAG GTAGAAATTTTTATTTTCCTCACTCTTTTGCAGTGTTTTATTTGAGTAAAGCAATTTACC TGAAATTCTAGAATTCTGGAAGAACCTAAATGTATTTGATGCTATCTGTGACAAAGAAGG TACATAGTATCCTGCAGAGATGTGTTTTGGTTTTCTGTCACATTGTATTGCTATAAGAAT ATGTTTCATGGACAAATAAAGGAAATTCAGATCATTTAAATGCTTACAAGTTTGAGATAA CTTTGGTTTCATTTAGAAAAGGAAATAAGTTTTAGGTGGCACTGTGGCTTAACTGGACTG AATTCAAATATTCTTTCAATTTCATCTCAGTTGCAATTTTGTATCAGAATCTTGTCCAAG TTGTTTCATGTGATTTGAGCTAGTTTTCTGCTTCAAAACATCTTTGGTTTTAAAAAATTC CTGTTGTCTTTTTTTTTGGCCTTTGAGATTTTGGTAATTGTAGAGCTCTTTTATAAGCTT TGTAGTTCAAATCCCTACACTTAGGAATTGCTTGTTTCATGTAACTGATAATTTAAAAAA ATTGTTTTGTTGGTGTGCTGTTAGTTTTGCTCAAATGTCAGCAGTTTCAAGCCTAATATT TATGACTTTCATATTAGAAATTTGGAAACAAAAATACATCAAGGAGTTATGTTGACATAA TTCTAAGGAGTCTTGTTTGTATTTTAGAATAAAATTAGAAAATAAAATTATTCTCTGTAC TTCTTTCCCCCATGATTGTTAAAGACTCTAACCTTAGAAATGAATTTCCAGTGATTTTTT TTTTTTTTCCCTAGAAAGAGTACTTAGTTAGGAAAGTACTTCCCAGCTGATTGGATTAGT GCTTGTGAGTCAGACATTGTTTTCAGACCTGCTTCTCTCATGATATGTCTTAGTATAGAA ATATTTATTTATTATGATACTGAGCAGATGATTGTCTTCTGTTAAAAGAATTAAATGGTC CTGTCTGTGCTATTGAGAATGTGAACATGATTATCGTTTGAAGACTGTATTACCACATGG ACTTGCCTATGCTTGGTCATTTGGGCCCTATGATTTGGTGACAGAAGGTCTGGTTACTGA AAATAAATGACCCTTCTCCCTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1317-1429, - strand, RNAz p=0.604975 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1317-1429, - strand, RNAz p=0.604975 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 53-216, gnl|bosTau2|chr9 (6081280-6081446) | |
| 53-216, gnl|canFam2|chr12 (40487690-40487863) | |
| 53-216, gnl|danRer3|chr20 (52888-52720) | |
| 53-216, gnl|dasNov1|scaffold_2917 (57492-57318) | |
| 53-216, gnl|echTel1|scaffold_297033 (425-599) | |
| 53-216, gnl|fr1|chrUn (67137423-67137596) | |
| 53-216, gnl|galGal2|chr3 (78797303-78797131) | |
| 53-216, gnl|hg17|chr6 (76658963-76659137) | |
| 53-216, gnl|Hg17|chr6 (76658964-76659127) | |
| 53-216, gnl|loxAfr1|scaffold_1213 (33172-33346) | |
| 53-216, gnl|mm7|chr9 (80368801-80368973) | |
| 53-216, gnl|Mm7|chr9 (80368801-80368964) | |
| 53-216, gnl|monDom2|scaffold_0 (157280630-157280452) | |
| 53-216, gnl|panTro1|chr5 (78017413-78017587) | |
| 53-216, gnl|rheMac2|chr4 (72031918-72032092) | |
| 53-216, gnl|rn3|chr8 (85370472-85370644) | |
| 53-216, gnl|tetNig1|chr14 (9364914-9364742) | |
| 53-216, gnl|xenTro1|scaffold_166 (646913-647093) | |
| 320-452, gnl|bosTau2|chr9 (6092823-6092955) | |
| 320-452, gnl|canFam2|chr12 (40498164-40498317) | |
| 320-452, gnl|danRer3|chr20 (48318-48168) | |
| 320-452, gnl|dasNov1|scaffold_2917 (46739-46586) | |
| 320-452, gnl|echTel1|scaffold_316795 (73451-73604) | |
| 320-452, gnl|fr1|chrUn (67140855-67141003) | |
| 320-452, gnl|galGal2|chr3 (78789036-78788882) | |
| 320-452, gnl|hg17|chr6 (76674922-76675075) | |
| 320-452, gnl|Hg17|chr6 (76674932-76675064) | |
| 320-452, gnl|loxAfr1|scaffold_1213 (42912-43065) | |
| 320-452, gnl|mm7|chr9 (80376971-80377124) | |
| 320-452, gnl|Mm7|chr9 (80376981-80377113) | |
| 320-452, gnl|monDom2|scaffold_0 (157270105-157269953) | |
| 320-452, gnl|panTro1|chr5 (78033456-78033609) | |
| 320-452, gnl|rheMac2|chr4 (72041797-72041950) | |
| 320-452, gnl|rn3|chr8 (85379095-85379248) | |
| 320-452, gnl|tetNig1|chr14 (9362569-9362423) | |
| 320-452, gnl|xenTro1|scaffold_166 (662567-662719) | |
| 668-2484, gnl|bosTau2|chr9 (6098867-6100688) | |
| 668-2484, gnl|Hg17|chr6 (76681246-76683047) | |
| 668-2484, gnl|Mm7|chr9 (80384115-80385837) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-216, gnl|bosTau2|chr9 (6081280-6081446) | |
| 53-216, gnl|canFam2|chr12 (40487690-40487863) | |
| 53-216, gnl|danRer3|chr20 (52888-52720) | |
| 53-216, gnl|dasNov1|scaffold_2917 (57492-57318) | |
| 53-216, gnl|echTel1|scaffold_297033 (425-599) | |
| 53-216, gnl|fr1|chrUn (67137423-67137596) | |
| 53-216, gnl|galGal2|chr3 (78797303-78797131) | |
| 53-216, gnl|hg17|chr6 (76658963-76659137) | |
| 53-216, gnl|Hg17|chr6 (76658964-76659127) | |
| 53-216, gnl|loxAfr1|scaffold_1213 (33172-33346) | |
| 53-216, gnl|mm7|chr9 (80368801-80368973) | |
| 53-216, gnl|Mm7|chr9 (80368801-80368964) | |
| 53-216, gnl|monDom2|scaffold_0 (157280630-157280452) | |
| 53-216, gnl|panTro1|chr5 (78017413-78017587) | |
| 53-216, gnl|rheMac2|chr4 (72031918-72032092) | |
| 53-216, gnl|rn3|chr8 (85370472-85370644) | |
| 53-216, gnl|tetNig1|chr14 (9364914-9364742) | |
| 53-216, gnl|xenTro1|scaffold_166 (646913-647093) | |
| 320-452, gnl|bosTau2|chr9 (6092823-6092955) | |
| 320-452, gnl|canFam2|chr12 (40498164-40498317) | |
| 320-452, gnl|danRer3|chr20 (48318-48168) | |
| 320-452, gnl|dasNov1|scaffold_2917 (46739-46586) | |
| 320-452, gnl|echTel1|scaffold_316795 (73451-73604) | |
| 320-452, gnl|fr1|chrUn (67140855-67141003) | |
| 320-452, gnl|galGal2|chr3 (78789036-78788882) | |
| 320-452, gnl|hg17|chr6 (76674922-76675075) | |
| 320-452, gnl|Hg17|chr6 (76674932-76675064) | |
| 320-452, gnl|loxAfr1|scaffold_1213 (42912-43065) | |
| 320-452, gnl|mm7|chr9 (80376971-80377124) | |
| 320-452, gnl|Mm7|chr9 (80376981-80377113) | |
| 320-452, gnl|monDom2|scaffold_0 (157270105-157269953) | |
| 320-452, gnl|panTro1|chr5 (78033456-78033609) | |
| 320-452, gnl|rheMac2|chr4 (72041797-72041950) | |
| 320-452, gnl|rn3|chr8 (85379095-85379248) | |
| 320-452, gnl|tetNig1|chr14 (9362569-9362423) | |
| 320-452, gnl|xenTro1|scaffold_166 (662567-662719) | |
| 668-2484, gnl|bosTau2|chr9 (6098867-6100688) | |
| 668-2484, gnl|Hg17|chr6 (76681246-76683047) | |
| 668-2484, gnl|Mm7|chr9 (80384115-80385837) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| kid (1.16762) | |
| cbr (0.895828) | |
| amn (0.417711) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| liv (0.292569) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ret (0.128733) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (1.16762) | |
| cbr (0.895828) | |
| amn (0.417711) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| liv (0.292569) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ret (0.128733) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |