Non-Coding RNA Search

Ss1.1-Pig4-TMW8047D22.3

Sequence:


               
               CAGGGTGGGAGAGACAGAGACGGAGGGAGAGCATGTAGGTGAAGGAGGTGGGAGAGGCAA
GAGGCAGGAAAGTAAGTGCAGAGGAGGGGACGTGATGGGAAGCAGGTGAAAGCCATTCAG
AGGTGGCGCCGGCAGGGAGAAGGATGGAGGAGAAGGGATGGAGAAGATAGAGGCCAGAGG
AGAGGGGACAGGGCTGGGGGAGCGCCCAGGGGGCGTCTCTCTGCGGGAGCCGGTGGGGGT
GGGGACAGGGAGGGGCTCCGCGAGCAGTGGAGCCAAAGGACATTGTCACGGAATCCGTCC
AAGAGGAAGGTAACTTCTAGACAGGGAAGGGATGGGGGGGTATTTATAAGGGCTACTTGG
TGGAAGATGGGCACCCCAAGGGTCTCCAGGCACACTGTGGCCCTTCCCAGAAAGGGAGGG
GTCCTTCTTCTCAAAGCTTCAACCACTCGTGTATTAGGGGATCATAGGGGCATTTTATTA
TTGATCACAGTCGCCATTATTGTTATTATATTACTATTTTTATTATTAAACCTCCCCCTC
CAGATAAGTAGGGGGCAAAATAAGTATTTATCTTCTCAAATGCCATATGCAAGGGAGGGA
TCAACCCTGACGCTCTGTGAGGCAGTAAGAAACCAATAAAGACAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGTGGGAGAGACAGAGACGGAGGGAGAGCATGTAGGTGAAGGAGGTGGGAGAGGCAA
GAGGCAGGAAAGTAAGTGCAGAGGAGGGGACGTGATGGGAAGCAGGTGAAAGCCATTCAG
AGGTGGCGCCGGCAGGGAGAAGGATGGAGGAGAAGGGATGGAGAAGATAGAGGCCAGAGG
AGAGGGGACAGGGCTGGGGGAGCGCCCAGGGGGCGTCTCTCTGCGGGAGCCGGTGGGGGT
GGGGACAGGGAGGGGCTCCGCGAGCAGTGGAGCCAAAGGACATTGTCACGGAATCCGTCC
AAGAGGAAGGTAACTTCTAGACAGGGAAGGGATGGGGGGGTATTTATAAGGGCTACTTGG
TGGAAGATGGGCACCCCAAGGGTCTCCAGGCACACTGTGGCCCTTCCCAGAAAGGGAGGG
GTCCTTCTTCTCAAAGCTTCAACCACTCGTGTATTAGGGGATCATAGGGGCATTTTATTA
TTGATCACAGTCGCCATTATTGTTATTATATTACTATTTTTATTATTAAACCTCCCCCTC
CAGATAAGTAGGGGGCAAAATAAGTATTTATCTTCTCAAATGCCATATGCAAGGGAGGGA
TCAACCCTGACGCTCTGTGAGGCAGTAAGAAACCAATAAAGACAACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               174-279, - strand, RNAz p=0.868224

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-279, - strand, RNAz p=0.868224

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-648, gnl|bosTau2|chr29 (34008451-34007814)
               

               
               16-648, gnl|Hg17|chr11 (64348035-64347107)
               

               
               16-648, gnl|Mm7|chr19 (6219842-6220449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-648, gnl|bosTau2|chr29 (34008451-34007814)
               

               
               16-648, gnl|Hg17|chr11 (64348035-64347107)
               

               
               16-648, gnl|Mm7|chr19 (6219842-6220449)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jej (0.197844)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               fbs (0.175346)

	16-648, gnl\|bosTau2\|chr29 (34008451-34007814)
	16-648, gnl\|Hg17\|chr11 (64348035-64347107)
	16-648, gnl\|Mm7\|chr19 (6219842-6220449)