Ss1.1-Pig4-TMW8047E02.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CGCCATTGCCATCTCGCTGGGGAAGATCTTCGCCCTGAGGCATGGCTACCGGGTGGACAG CAACCAGGAGCTGGTGGCGCTCGGCCTCAGTAACTTCATTGGGGGCATCTTCCAGTGCTT CCCTGTGAGCTGCTCTATGTCTCGGAGCCTGGTACAGGAGAGCACCGGGGGCAACACACA GGTGGCTGGAGCCATCTCCTCCCTCTTCATCCTCATTATCATCCTCAAACTTGGAGAACT CTTCCAAGACCTGCCCAAGGCAGTTCTGGCAGCCGTCATCATTGTGAACCTGAAGGGCAT GTTGATGCAGTTCACTGACTTATGCTCCCTCTGGAAGACAAATCGAGTGGATCTGCTCAT CTGGCTAGTGACCTTTGTGGCCACCATCCTGCTGAACCTGGACCTTGGCCTGGCGGTTGC GATAGCCTTCTCCATGCTGCTCGTTGTGGTCCGCATACAGCTGCCCCACTACTCTGTCCT GGGGCAGATGCCAGACACAGACGTTTACAGAGATGTGGCAGAGTACTCAGAAGCCAGGGA GGTCCCGGGCGTGAAAATCTTCCGCTCCTCAACCACCATGTTCTTTGCCAACGCTGAGCT CTACGGTGACGCGCTCAAGCAGAGGTGTGGTGTGGATGTGGACCGCCTCATCTCCCAGAA GAAGAAGCTGCTCAGGCGGCAGGAGCTAAAGCTGAAACGACTGCAGAAGGACAACAAGCT CGTGAAAAAGGACACTTCTATTTCCATCAATGTAAACACTGGTATCACAAACATCGAGAG CAACGATGTGGAGGGCTCCAACGTCAAGGTGAGTGCAGAGAATGAGCTAGAGGATATAGC AGCGGGAGATCAAGAAGATGCCAAGGCCCCAGCCATGTCCTCACTGAAGGCCCTGGGTCT GCCTCAGCCAGATTTCCACAGCCTCATCCTGGACCTGGGCACCCTCTCCTTTGTGGACAC TGTGTGTCTCAAGAGCCTGAAGAATATTTTCCGTGACTTCCGGGAGATCGAGGTGGAGGT GTACATGGCCGCCTGCCACTCTCCTGTGGTCTCGCAGCTCGAGGCTGGGCATTTCTTTGA TGCATCTATCACCAAGCAGCATCTCTTTGCTTCAGTCCACGATGCTGTCATCTTTGCCCT CCAGCACCCACGGTCTGGCCCCGTCAGCCCTGCTTTGGTTACTAAACTCTGACCATGCTG CCACCTTGCCGGAGACTGCCCACCTCTGGAGGTTGTGACAGGGTACCTGTGAGAATCCCC TTCCACTGGGCTACCTCCAGATGTCACCCAGGAGTCACCTCCGTACACACACGCACAACA CAACTCAGGGATGGAGGTCCTGGGACTCTTAAGTTCAGTGATGAGGCCCTGGCTGAGCTG GAGGAGGATGCCTGTTTTTAGCCTCAGGAATAAAGATTTGTTTGCCTAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CGCCATTGCCATCTCGCTGGGGAAGATCTTCGCCCTGAGGCATGGCTACCGGGTGGACAG CAACCAGGAGCTGGTGGCGCTCGGCCTCAGTAACTTCATTGGGGGCATCTTCCAGTGCTT CCCTGTGAGCTGCTCTATGTCTCGGAGCCTGGTACAGGAGAGCACCGGGGGCAACACACA GGTGGCTGGAGCCATCTCCTCCCTCTTCATCCTCATTATCATCCTCAAACTTGGAGAACT CTTCCAAGACCTGCCCAAGGCAGTTCTGGCAGCCGTCATCATTGTGAACCTGAAGGGCAT GTTGATGCAGTTCACTGACTTATGCTCCCTCTGGAAGACAAATCGAGTGGATCTGCTCAT CTGGCTAGTGACCTTTGTGGCCACCATCCTGCTGAACCTGGACCTTGGCCTGGCGGTTGC GATAGCCTTCTCCATGCTGCTCGTTGTGGTCCGCATACAGCTGCCCCACTACTCTGTCCT GGGGCAGATGCCAGACACAGACGTTTACAGAGATGTGGCAGAGTACTCAGAAGCCAGGGA GGTCCCGGGCGTGAAAATCTTCCGCTCCTCAACCACCATGTTCTTTGCCAACGCTGAGCT CTACGGTGACGCGCTCAAGCAGAGGTGTGGTGTGGATGTGGACCGCCTCATCTCCCAGAA GAAGAAGCTGCTCAGGCGGCAGGAGCTAAAGCTGAAACGACTGCAGAAGGACAACAAGCT CGTGAAAAAGGACACTTCTATTTCCATCAATGTAAACACTGGTATCACAAACATCGAGAG CAACGATGTGGAGGGCTCCAACGTCAAGGTGAGTGCAGAGAATGAGCTAGAGGATATAGC AGCGGGAGATCAAGAAGATGCCAAGGCCCCAGCCATGTCCTCACTGAAGGCCCTGGGTCT GCCTCAGCCAGATTTCCACAGCCTCATCCTGGACCTGGGCACCCTCTCCTTTGTGGACAC TGTGTGTCTCAAGAGCCTGAAGAATATTTTCCGTGACTTCCGGGAGATCGAGGTGGAGGT GTACATGGCCGCCTGCCACTCTCCTGTGGTCTCGCAGCTCGAGGCTGGGCATTTCTTTGA TGCATCTATCACCAAGCAGCATCTCTTTGCTTCAGTCCACGATGCTGTCATCTTTGCCCT CCAGCACCCACGGTCTGGCCCCGTCAGCCCTGCTTTGGTTACTAAACTCTGACCATGCTG CCACCTTGCCGGAGACTGCCCACCTCTGGAGGTTGTGACAGGGTACCTGTGAGAATCCCC TTCCACTGGGCTACCTCCAGATGTCACCCAGGAGTCACCTCCGTACACACACGCACAACA CAACTCAGGGATGGAGGTCCTGGGACTCTTAAGTTCAGTGATGAGGCCCTGGCTGAGCTG GAGGAGGATGCCTGTTTTTAGCCTCAGGAATAAAGATTTGTTTGCCTAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
65-184, + strand, RNAz p=0.750908 | |
355-463, - strand, RNAz p=0.616478 | |
807-966, - strand, RNAz p=0.699044 |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
65-184, + strand, RNAz p=0.750908 | |
355-463, - strand, RNAz p=0.616478 | |
807-966, - strand, RNAz p=0.699044 |
Aligned organism(s): 37 entry(ies) | More info |
Aligned organism(s): 37 entry(ies) | Help | Less info |
65-184, gnl|bosTau2|chr22 (39348701-39348582) | |
65-184, gnl|Hg17|chr3 (48643160-48643028) | |
65-184, gnl|Mm7|chr9 (108567707-108567826) | |
355-463, gnl|bosTau2|chr22 (39347876-39347768) | |
355-463, gnl|canFam2|chr20 (43489902-43489773) | |
355-463, gnl|danRer3|chr24 (16610813-16610934) | |
355-463, gnl|dasNov1|scaffold_155074 (4337-4227) | |
355-463, gnl|echTel1|scaffold_267406 (904-1035) | |
355-463, gnl|fr1|chrUn (77291085-77291219) | |
355-463, gnl|galGal2|chr12 (9103285-9103152) | |
355-463, gnl|hg17|chr3 (48642304-48642435) | |
355-463, gnl|Hg17|chr3 (48642416-48642308) | |
355-463, gnl|loxAfr1|scaffold_20366 (34594-34471) | |
355-463, gnl|mm7|chr9 (108568627-108568495) | |
355-463, gnl|Mm7|chr9 (108568513-108568621) | |
355-463, gnl|monDom2|scaffold_5 (77078795-77078662) | |
355-463, gnl|oryCun1|scaffold_193142 (6717-6848) | |
355-463, gnl|panTro1|chr2 (50128791-50128922) | |
355-463, gnl|rheMac2|chr2 (87843435-87843304) | |
355-463, gnl|rn3|chr8 (113949734-113949602) | |
355-463, gnl|tetNig1|chr9 (762302-762164) | |
625-731, gnl|bosTau2|chr22 (39346245-39346139) | |
625-731, gnl|Hg17|chr3 (48640979-48640870) | |
625-731, gnl|Mm7|chr9 (108570310-108570416) | |
807-985, gnl|bosTau2|chr22 (39344595-39344417) | |
807-985, gnl|Hg17|chr3 (48639491-48639313) | |
1168-1427, gnl|bosTau2|chr22 (39343519-39343246) | |
1168-1427, gnl|canFam2|chr20 (43494476-43493704) | |
1168-1427, gnl|dasNov1|scaffold_44574 (16188-15422) | |
1168-1427, gnl|hg17|chr3 (48637890-48638620) | |
1168-1427, gnl|Hg17|chr3 (48638447-48638162) | |
1168-1427, gnl|mm7|chr9 (108622859-108622094) | |
1168-1427, gnl|Mm7|chr9 (108622276-108622555) | |
1168-1427, gnl|oryCun1|scaffold_193142 (2543-3281) | |
1168-1427, gnl|panTro1|chr2 (50124376-50125106) | |
1168-1427, gnl|rheMac2|chr2 (87847837-87847109) | |
1168-1427, gnl|rn3|chr8 (113955063-113954387) |
Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
65-184, gnl|bosTau2|chr22 (39348701-39348582) | |
65-184, gnl|Hg17|chr3 (48643160-48643028) | |
65-184, gnl|Mm7|chr9 (108567707-108567826) | |
355-463, gnl|bosTau2|chr22 (39347876-39347768) | |
355-463, gnl|canFam2|chr20 (43489902-43489773) | |
355-463, gnl|danRer3|chr24 (16610813-16610934) | |
355-463, gnl|dasNov1|scaffold_155074 (4337-4227) | |
355-463, gnl|echTel1|scaffold_267406 (904-1035) | |
355-463, gnl|fr1|chrUn (77291085-77291219) | |
355-463, gnl|galGal2|chr12 (9103285-9103152) | |
355-463, gnl|hg17|chr3 (48642304-48642435) | |
355-463, gnl|Hg17|chr3 (48642416-48642308) | |
355-463, gnl|loxAfr1|scaffold_20366 (34594-34471) | |
355-463, gnl|mm7|chr9 (108568627-108568495) | |
355-463, gnl|Mm7|chr9 (108568513-108568621) | |
355-463, gnl|monDom2|scaffold_5 (77078795-77078662) | |
355-463, gnl|oryCun1|scaffold_193142 (6717-6848) | |
355-463, gnl|panTro1|chr2 (50128791-50128922) | |
355-463, gnl|rheMac2|chr2 (87843435-87843304) | |
355-463, gnl|rn3|chr8 (113949734-113949602) | |
355-463, gnl|tetNig1|chr9 (762302-762164) | |
625-731, gnl|bosTau2|chr22 (39346245-39346139) | |
625-731, gnl|Hg17|chr3 (48640979-48640870) | |
625-731, gnl|Mm7|chr9 (108570310-108570416) | |
807-985, gnl|bosTau2|chr22 (39344595-39344417) | |
807-985, gnl|Hg17|chr3 (48639491-48639313) | |
1168-1427, gnl|bosTau2|chr22 (39343519-39343246) | |
1168-1427, gnl|canFam2|chr20 (43494476-43493704) | |
1168-1427, gnl|dasNov1|scaffold_44574 (16188-15422) | |
1168-1427, gnl|hg17|chr3 (48637890-48638620) | |
1168-1427, gnl|Hg17|chr3 (48638447-48638162) | |
1168-1427, gnl|mm7|chr9 (108622859-108622094) | |
1168-1427, gnl|Mm7|chr9 (108622276-108622555) | |
1168-1427, gnl|oryCun1|scaffold_193142 (2543-3281) | |
1168-1427, gnl|panTro1|chr2 (50124376-50125106) | |
1168-1427, gnl|rheMac2|chr2 (87847837-87847109) | |
1168-1427, gnl|rn3|chr8 (113955063-113954387) |
Expressed library(ies): 5 entry(ies) | More info |
Expressed library(ies): 5 entry(ies) | Help | Less info |
jej (0.296765) | |
nms (0.213858) | |
fhi (0.169578) | |
cag (0.151194) | |
ebs (0.118301) |
Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
jej (0.296765) | |
nms (0.213858) | |
fhi (0.169578) | |
cag (0.151194) | |
ebs (0.118301) |