Non-Coding RNA Search

Ss1.1-Pig4-TMW8047E17.3

Sequence:


               
               TTTCAAGATGGGAAGTCCAGACTCAGCTGTGATTTTACCTAGCACTCCACAAGCCGGTGC
CAATCCACCATCTCCCCCTACAAGTAGTACAAGAAAACAACCTATGAGTGCAACCCTTAG
AGAAAGGTTAAGGAAAACTAGATCTTCATTTAATTCCTGTTATAGTGTGGTAAAACGACT
TAAAGTTGAGAGTGAAGAAAATGATCAGACTTTTTCAGAGAAACCAGCATCTTCAGCAGA
AGAAAAAAACTGTTTGGAATTTCAAGAAAATTTTAAACACATAGACAGTGAATTTGAAGA
AAGTCCATATTCGAAAAATACCTTCAAGAATATCAGTGCATGTGAATCTAATTCATTTGA
TACTGAATCATGCAGAGATCTCCAAGATGATTTTATGAACGAGAATCTTCCTAAACAAGG
ATTAAACAAAGAAAAAGCAAAATTGGTGAAGCAGATTCAGGAGAAAGAAGACCTTCTTCG
AAGGCTAAAACTAGTCAAAATGTATAGATCAAAGAATGACCTGTCTCAGTTACAGTTGTT
AATAAAGAAGTGGAGAAGCTGTAGCCAGCTGTTGCTTTATGAGTTGCAGTCAGCTATGTC
AGAAGAGAACAAGAAACTAAGCCTTACTCAGCTGATAGACCACTATGGGTTAGATGATAA
ACTGCTACACTATAGCAGAAATGAAGAAGAATTTATAGATGTTTAATTCATAATTTTTTC
TCCAGAATATCTTTGTGAACCTAACTAAAAAATACTTATACATTTTAAAGGGAAGATATA
AACCATTAGGGCCTAGAGAAAGGTATCCTGTGAGCCTGGATCAATTTAGGGCCTCTGTTA
TATAAATATAAACTAGGTTCTAAAATGAAAATTTAGTATTTTGAATAAATTTGCCAAAGA
AAACTTGACAGTTAAGGAAATGTGAAAAAAAATTAAATCATAAAATTTGGAGAATTGTGG
AAGTGAGTTTTAATACATTGTTTTATTTATTGTGATAAAAAGTTTTATTTTTAATGTTAA
AATAACATCTTGCAAATGTCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAAGATGGGAAGTCCAGACTCAGCTGTGATTTTACCTAGCACTCCACAAGCCGGTGC
CAATCCACCATCTCCCCCTACAAGTAGTACAAGAAAACAACCTATGAGTGCAACCCTTAG
AGAAAGGTTAAGGAAAACTAGATCTTCATTTAATTCCTGTTATAGTGTGGTAAAACGACT
TAAAGTTGAGAGTGAAGAAAATGATCAGACTTTTTCAGAGAAACCAGCATCTTCAGCAGA
AGAAAAAAACTGTTTGGAATTTCAAGAAAATTTTAAACACATAGACAGTGAATTTGAAGA
AAGTCCATATTCGAAAAATACCTTCAAGAATATCAGTGCATGTGAATCTAATTCATTTGA
TACTGAATCATGCAGAGATCTCCAAGATGATTTTATGAACGAGAATCTTCCTAAACAAGG
ATTAAACAAAGAAAAAGCAAAATTGGTGAAGCAGATTCAGGAGAAAGAAGACCTTCTTCG
AAGGCTAAAACTAGTCAAAATGTATAGATCAAAGAATGACCTGTCTCAGTTACAGTTGTT
AATAAAGAAGTGGAGAAGCTGTAGCCAGCTGTTGCTTTATGAGTTGCAGTCAGCTATGTC
AGAAGAGAACAAGAAACTAAGCCTTACTCAGCTGATAGACCACTATGGGTTAGATGATAA
ACTGCTACACTATAGCAGAAATGAAGAAGAATTTATAGATGTTTAATTCATAATTTTTTC
TCCAGAATATCTTTGTGAACCTAACTAAAAAATACTTATACATTTTAAAGGGAAGATATA
AACCATTAGGGCCTAGAGAAAGGTATCCTGTGAGCCTGGATCAATTTAGGGCCTCTGTTA
TATAAATATAAACTAGGTTCTAAAATGAAAATTTAGTATTTTGAATAAATTTGCCAAAGA
AAACTTGACAGTTAAGGAAATGTGAAAAAAAATTAAATCATAAAATTTGGAGAATTGTGG
AAGTGAGTTTTAATACATTGTTTTATTTATTGTGATAAAAAGTTTTATTTTTAATGTTAA
AATAACATCTTGCAAATGTCTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50593526|ref|NP_001002759.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50593526|ref|NP_001002759.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               98-461, gnl|bosTau2|chr26 (16174159-16173799)
               

               
               98-461, gnl|Hg17|chr10 (105873459-105873842)
               

               
               98-461, gnl|Mm7|chr19 (47634013-47634378)
               


               
               513-1044, gnl|bosTau2|chr26 (16172807-16172254)
               

               
               513-1044, gnl|Hg17|chr10 (105875259-105876018)
               

               
               513-1044, gnl|Mm7|chr19 (47635319-47635916)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-461, gnl|bosTau2|chr26 (16174159-16173799)
               

               
               98-461, gnl|Hg17|chr10 (105873459-105873842)
               

               
               98-461, gnl|Mm7|chr19 (47634013-47634378)
               


               
               513-1044, gnl|bosTau2|chr26 (16172807-16172254)
               

               
               513-1044, gnl|Hg17|chr10 (105875259-105876018)
               

               
               513-1044, gnl|Mm7|chr19 (47635319-47635916)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cte (0.29274)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	98-461, gnl\|bosTau2\|chr26 (16174159-16173799)
	98-461, gnl\|Hg17\|chr10 (105873459-105873842)
	98-461, gnl\|Mm7\|chr19 (47634013-47634378)

	513-1044, gnl\|bosTau2\|chr26 (16172807-16172254)
	513-1044, gnl\|Hg17\|chr10 (105875259-105876018)
	513-1044, gnl\|Mm7\|chr19 (47635319-47635916)

	cte (0.29274)
	col (0.195008)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	mcp (0.170648)
	tra (0.123092)
	eje (0.0988338)