Non-Coding RNA Search

Ss1.1-Pig4-TMW8047E23.3

Sequence:


               
               GCAAATGGTGGGGTTTTTGCTTTGTTTTCCCTACACTTCTTTCTCTTCTCCTTCATGATG
CCCTTGGAATATATTTTAGTAGTAATGGAAAGTAGTAATCACAGTAAAAAAACAAAAACA
CACTAGTTAGTGTAGGTTTTTGGAAGGGTGGTCTTTATACAGGTTTTACTGAAATGGTAA
AGGGTGGCTGAAAAGACAGTATTAGTGAATTTATTTTATATGGATCAAAAGTGAATAATG
TATGAATGAGAGTTGTAAGAAGGATTTTTATTTTGTTATAATTTAGTTACCATTGTCAGT
GTTATTTCAAAGGTTCTTTGAAGACTTTGGGGGTGGGGGACAGATCAGAGTTTAATTTGA
GTATTTTGGATATTAGTGTTCCTCGTGAAGATATACTTGTATATTCAATTTTAATGGCTT
TGAGATTTGTAAGATTGTATGTTGTATATACCATTCTATTAAGAAACACGTACACCTGTC
CACTGTGCTTTCTATATAGATAAAGCATGATAAAGATTATTATTTAAAATATACTTGTAT
TTATACCTCAGATATTCTTTTGGATTTTGTACCTCAAGGCTTTTTTTGGTTTGTTTGTTT
TTGCTAATGTAAATACACTTTACATGAATACAGTCTAAGTGAAAAAAAAAGTAAATAAGA
GGTTTATAACTTGCTCTATATCTGTACAGAATATAATCAATAAGTGCACTATTAAATGTT
TAAAGTAAGGGAAATGTCTGGTCTGCTTTCCGTTGTATCGCATCTCACTCCCGCCCTGAA
ACCACAGATGGCGAGGCAGAATACCATCCCGGCCTCAACCAAAAGGAAACTACAGATCTG
CTGCAGGAAAATCGGACTGCAACTCATTCCAAGGCCAAACTGCAACTGAGCCACTCACTA
ACAAACAGGAAACCCTGGTGAAGGTTCAGGAAGCATGGAGATGCCCTCCAAAGAAAGGTC
GTGAGGAAACGATGCTGAGAAAGTTCCAAGAATAAGCAGCAGCAGCCGAAAGATGCTCCT
CAGCAAAGCCAAGGTCACCGGTTAATTCCAGAAAAGGTCTCTTTCCCACTGTCTGGCCTT
CCTGTTGAAAGGATTCCTGACATATTTGACCGGAGGAGAATGTGAAGGATATGAACATTG
TCAAGAACTCTGCTTTAAGCCGTCTAAAGTAATATTGCCACAATTTACTAATTGCGACTA
ATTGCCTAGGCTGTAAGCTCTCTGAGAGCAGGGCTCTTCTACACGTCTTTATAATCCCCT
ACAGCAGCTTTCAGTGTTTTGTACTTGTAGGCACCTAATAAATTTATTATTTACCAAACG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAATGGTGGGGTTTTTGCTTTGTTTTCCCTACACTTCTTTCTCTTCTCCTTCATGATG
CCCTTGGAATATATTTTAGTAGTAATGGAAAGTAGTAATCACAGTAAAAAAACAAAAACA
CACTAGTTAGTGTAGGTTTTTGGAAGGGTGGTCTTTATACAGGTTTTACTGAAATGGTAA
AGGGTGGCTGAAAAGACAGTATTAGTGAATTTATTTTATATGGATCAAAAGTGAATAATG
TATGAATGAGAGTTGTAAGAAGGATTTTTATTTTGTTATAATTTAGTTACCATTGTCAGT
GTTATTTCAAAGGTTCTTTGAAGACTTTGGGGGTGGGGGACAGATCAGAGTTTAATTTGA
GTATTTTGGATATTAGTGTTCCTCGTGAAGATATACTTGTATATTCAATTTTAATGGCTT
TGAGATTTGTAAGATTGTATGTTGTATATACCATTCTATTAAGAAACACGTACACCTGTC
CACTGTGCTTTCTATATAGATAAAGCATGATAAAGATTATTATTTAAAATATACTTGTAT
TTATACCTCAGATATTCTTTTGGATTTTGTACCTCAAGGCTTTTTTTGGTTTGTTTGTTT
TTGCTAATGTAAATACACTTTACATGAATACAGTCTAAGTGAAAAAAAAAGTAAATAAGA
GGTTTATAACTTGCTCTATATCTGTACAGAATATAATCAATAAGTGCACTATTAAATGTT
TAAAGTAAGGGAAATGTCTGGTCTGCTTTCCGTTGTATCGCATCTCACTCCCGCCCTGAA
ACCACAGATGGCGAGGCAGAATACCATCCCGGCCTCAACCAAAAGGAAACTACAGATCTG
CTGCAGGAAAATCGGACTGCAACTCATTCCAAGGCCAAACTGCAACTGAGCCACTCACTA
ACAAACAGGAAACCCTGGTGAAGGTTCAGGAAGCATGGAGATGCCCTCCAAAGAAAGGTC
GTGAGGAAACGATGCTGAGAAAGTTCCAAGAATAAGCAGCAGCAGCCGAAAGATGCTCCT
CAGCAAAGCCAAGGTCACCGGTTAATTCCAGAAAAGGTCTCTTTCCCACTGTCTGGCCTT
CCTGTTGAAAGGATTCCTGACATATTTGACCGGAGGAGAATGTGAAGGATATGAACATTG
TCAAGAACTCTGCTTTAAGCCGTCTAAAGTAATATTGCCACAATTTACTAATTGCGACTA
ATTGCCTAGGCTGTAAGCTCTCTGAGAGCAGGGCTCTTCTACACGTCTTTATAATCCCCT
ACAGCAGCTTTCAGTGTTTTGTACTTGTAGGCACCTAATAAATTTATTATTTACCAAACG
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               824-974, - strand, RNAz p=0.977945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               824-974, - strand, RNAz p=0.977945

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-1317, gnl|bosTau2|chr3 (1098365-1097055)
               

               
               16-1317, gnl|Hg17|chr8 (12986551-12985247)
               

               
               16-1317, gnl|Mm7|chr8 (35336110-35334763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-1317, gnl|bosTau2|chr3 (1098365-1097055)
               

               
               16-1317, gnl|Hg17|chr8 (12986551-12985247)
               

               
               16-1317, gnl|Mm7|chr8 (35336110-35334763)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               isp (0.451128)
               

               
               liv (0.438853)
               

               
               elu (0.385356)
               

               
               jca (0.22792)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.451128)
               

               
               liv (0.438853)
               

               
               elu (0.385356)
               

               
               jca (0.22792)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	16-1317, gnl\|bosTau2\|chr3 (1098365-1097055)
	16-1317, gnl\|Hg17\|chr8 (12986551-12985247)
	16-1317, gnl\|Mm7\|chr8 (35336110-35334763)

	isp (0.451128)
	liv (0.438853)
	elu (0.385356)
	jca (0.22792)
	fty (0.17584)
	fat (0.147427)
	ova (0.129132)
	bla (0.124347)
	spc (0.113366)