Non-Coding RNA Search

Ss1.1-Pig4-TMW8047E24.3

Sequence:


               
               ACCCCCAGCAGAAAGTGAGGAAGGAGCCTCAGAACCTTCACCTGGGGGCATCAAGTGGGG
ACACCTCTTTGGGTCCCGGAAGGCTCAGCGGGAGGCCCGGCCCACAAACAGGCTACCCTC
GGACTGGCTGAGCCTGGACAAGTCCATGTTCCAACTAGTGGCACAAACGGTGGGTGCCCG
CCGGGAACCAGAGCCCAAGGAGAGCCTACAGGAGCCACACTCTCCAGCCCTGCCTTCCAA
ATCTCCATGCGAGGTGAAGGCACTGTGCCACCACCTGGCCACAGGCCCTGGACAGCTGAG
CTTCCGCAAGGGAGATATCCTACGGGTGCTGGGGCCAGCCGGAGGAGACTGGCTGCGCTG
CAGCCGGGGCCCTGACACCGGCCTGGTGCCTCTGGCCTATGTGACTTTGACCCCAACTCC
AAGTCCGACCCCTGGAAGCAGCCAAAACTGAGGCCCTGTGCATGTTGGTGGCCTCAGGGA
CCCTCACGACCCCTAGACTCATAGCCTGAGAGCCCTTCCCAAGCCCTCTGGCTTGGTTAC
AGAGAGTAGACCAAGAGCTAGGGGCCACATATCCCTGTGCTCAGTATTAATAACTCCTCT
TTAACTGTCCCAGTGACTCCGTCCAGACCTCCACCCAGGAAGGAGGGGAGGGGTGCAGCA
CTGGGCTGCCAGAATTTCCCCAGCACATCCCTATGGGGGGAGGTGACCAGAAGGCCCATT
TGCAGGGTTCCCTAGGCCAAGTGGTGAGGAGGATGGAAGACAGTATTAGGGCCAGCCCCC
TAAGCCTCCAGCTGTAAATAGGCTGTGGCCAGTGCTGGTGGTCAGAAGAGGGAGGAGGAG
CCCAGGCTTCTGTTTATGTATTTATTTATTTATTTATTACACCTATTAATAAAAAAGGTG
CTCGGCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCCAGCAGAAAGTGAGGAAGGAGCCTCAGAACCTTCACCTGGGGGCATCAAGTGGGG
ACACCTCTTTGGGTCCCGGAAGGCTCAGCGGGAGGCCCGGCCCACAAACAGGCTACCCTC
GGACTGGCTGAGCCTGGACAAGTCCATGTTCCAACTAGTGGCACAAACGGTGGGTGCCCG
CCGGGAACCAGAGCCCAAGGAGAGCCTACAGGAGCCACACTCTCCAGCCCTGCCTTCCAA
ATCTCCATGCGAGGTGAAGGCACTGTGCCACCACCTGGCCACAGGCCCTGGACAGCTGAG
CTTCCGCAAGGGAGATATCCTACGGGTGCTGGGGCCAGCCGGAGGAGACTGGCTGCGCTG
CAGCCGGGGCCCTGACACCGGCCTGGTGCCTCTGGCCTATGTGACTTTGACCCCAACTCC
AAGTCCGACCCCTGGAAGCAGCCAAAACTGAGGCCCTGTGCATGTTGGTGGCCTCAGGGA
CCCTCACGACCCCTAGACTCATAGCCTGAGAGCCCTTCCCAAGCCCTCTGGCTTGGTTAC
AGAGAGTAGACCAAGAGCTAGGGGCCACATATCCCTGTGCTCAGTATTAATAACTCCTCT
TTAACTGTCCCAGTGACTCCGTCCAGACCTCCACCCAGGAAGGAGGGGAGGGGTGCAGCA
CTGGGCTGCCAGAATTTCCCCAGCACATCCCTATGGGGGGAGGTGACCAGAAGGCCCATT
TGCAGGGTTCCCTAGGCCAAGTGGTGAGGAGGATGGAAGACAGTATTAGGGCCAGCCCCC
TAAGCCTCCAGCTGTAAATAGGCTGTGGCCAGTGCTGGTGGTCAGAAGAGGGAGGAGGAG
CCCAGGCTTCTGTTTATGTATTTATTTATTTATTTATTACACCTATTAATAAAAAAGGTG
CTCGGCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|20987692|gb|AAH29647.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|20987692|gb|AAH29647.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               12-112, + strand, RNAz p=0.991683
               

               
               281-440, - strand, RNAz p=0.662372
               

               
               481-581, - strand, RNAz p=0.957069

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-112, + strand, RNAz p=0.991683
               

               
               281-440, - strand, RNAz p=0.662372
               

               
               481-581, - strand, RNAz p=0.957069

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               2-112, gnl|bosTau2|chr8 (28350041-28350151)
               

               
               2-112, gnl|canFam2|chr11 (55172650-55172733)
               

               
               2-112, gnl|danRer3|chr5 (9502078-9502149)
               

               
               2-112, gnl|echTel1|scaffold_309341 (91423-91506)
               

               
               2-112, gnl|fr1|chrUn (161705929-161706003)
               

               
               2-112, gnl|galGal2|chrZ_random (8375418-8375498)
               

               
               2-112, gnl|hg17|chr9 (35550739-35550822)
               

               
               2-112, gnl|Hg17|chr9 (35550739-35550849)
               

               
               2-112, gnl|mm7|chr4 (43439833-43439916)
               

               
               2-112, gnl|Mm7|chr4 (43439833-43439943)
               

               
               2-112, gnl|monDom2|scaffold_17 (45983613-45983530)
               

               
               2-112, gnl|oryCun1|scaffold_139569 (5312-5395)
               

               
               2-112, gnl|panTro1|chr11 (36107998-36108081)
               

               
               2-112, gnl|rheMac2|chr15 (41971715-41971632)
               

               
               2-112, gnl|xenTro1|scaffold_611 (691455-691369)
               


               
               242-689, gnl|bosTau2|chr8 (28350458-28350905)
               

               
               242-689, gnl|Hg17|chr9 (35551171-35551630)
               

               
               242-689, gnl|Mm7|chr4 (43440255-43440705)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-112, gnl|bosTau2|chr8 (28350041-28350151)
               

               
               2-112, gnl|canFam2|chr11 (55172650-55172733)
               

               
               2-112, gnl|danRer3|chr5 (9502078-9502149)
               

               
               2-112, gnl|echTel1|scaffold_309341 (91423-91506)
               

               
               2-112, gnl|fr1|chrUn (161705929-161706003)
               

               
               2-112, gnl|galGal2|chrZ_random (8375418-8375498)
               

               
               2-112, gnl|hg17|chr9 (35550739-35550822)
               

               
               2-112, gnl|Hg17|chr9 (35550739-35550849)
               

               
               2-112, gnl|mm7|chr4 (43439833-43439916)
               

               
               2-112, gnl|Mm7|chr4 (43439833-43439943)
               

               
               2-112, gnl|monDom2|scaffold_17 (45983613-45983530)
               

               
               2-112, gnl|oryCun1|scaffold_139569 (5312-5395)
               

               
               2-112, gnl|panTro1|chr11 (36107998-36108081)
               

               
               2-112, gnl|rheMac2|chr15 (41971715-41971632)
               

               
               2-112, gnl|xenTro1|scaffold_611 (691455-691369)
               


               
               242-689, gnl|bosTau2|chr8 (28350458-28350905)
               

               
               242-689, gnl|Hg17|chr9 (35551171-35551630)
               

               
               242-689, gnl|Mm7|chr4 (43440255-43440705)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               amn (0.835422)
               

               
               cbe (0.478469)
               

               
               nep (0.183925)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               cbe (0.478469)
               

               
               nep (0.183925)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	12-112, + strand, RNAz p=0.991683
	281-440, - strand, RNAz p=0.662372
	481-581, - strand, RNAz p=0.957069

	2-112, gnl\|bosTau2\|chr8 (28350041-28350151)
	2-112, gnl\|canFam2\|chr11 (55172650-55172733)
	2-112, gnl\|danRer3\|chr5 (9502078-9502149)
	2-112, gnl\|echTel1\|scaffold_309341 (91423-91506)
	2-112, gnl\|fr1\|chrUn (161705929-161706003)
	2-112, gnl\|galGal2\|chrZ_random (8375418-8375498)
	2-112, gnl\|hg17\|chr9 (35550739-35550822)
	2-112, gnl\|Hg17\|chr9 (35550739-35550849)
	2-112, gnl\|mm7\|chr4 (43439833-43439916)
	2-112, gnl\|Mm7\|chr4 (43439833-43439943)
	2-112, gnl\|monDom2\|scaffold_17 (45983613-45983530)
	2-112, gnl\|oryCun1\|scaffold_139569 (5312-5395)
	2-112, gnl\|panTro1\|chr11 (36107998-36108081)
	2-112, gnl\|rheMac2\|chr15 (41971715-41971632)
	2-112, gnl\|xenTro1\|scaffold_611 (691455-691369)

	242-689, gnl\|bosTau2\|chr8 (28350458-28350905)
	242-689, gnl\|Hg17\|chr9 (35551171-35551630)
	242-689, gnl\|Mm7\|chr4 (43440255-43440705)

	amn (0.835422)
	cbe (0.478469)
	nep (0.183925)
	fco (0.157208)
	lnt (0.142308)
	hlv (0.139256)
	pla (0.133672)
	kid (0.129735)
	ecc (0.115035)
	cty (0.10408)