Non-Coding RNA Search

Ss1.1-Pig4-TMW8047F10.5

Sequence:


               
               CTGTCAATGGAGGCGCGGGTGGTGGGAGCGAGAACATGGCTGCACCTGGGGCCTGCGCGG
CCGCCCGAGTGGGGGAGGGGAGCTGGGGCGCAGGGGTGAAAATCCAGGCCGCGGGGAGCT
TCATCCTGTTTGCTGACGCGCTCCAGCCGGCCTCAGCCACCGTTCAAGGCTCGCACTCAC
TCTTGCCCCCGAGATTCCCTGCAAATTGAGAGGTCGGAACACTGCAAAGGCCGGGGCTCC
CCAGGCCGGCATGCCTCCTCCCAGGCTCAGCCAAGGGACTTCTCCGCCCTGCACCACCCT
CCAGGACACAAAGAACTGTTAGTTTTGAAAGCTTGCCTCAAAAGGGGCTATTGCCCCAAC
TTTGGACGGGCGAGGGAAGAGCACCCTTCTGTTTTTGTTTACCCCACCCTTAGGCTTTGC
TCACTTTTTCTTAACATTTAGAAGGGAAGTTAAGGAGGAAAAGCCAAGGAGGGGAGCAGA
AAACGTGATTTGCAGCCCGTTGTGTTCTGTCAACCGCTAAGCCGTCCCCTCCCCCCGGTA
ATTTTTTTGCATCTCAACTTTGATTAGCTCGTGAATTTCGAAAATGGTGAGACGCTAGTG
TACGCTCAAGTTAGAAGTTTTTAAAACTCGGGCCCAGAGATTTTAGATGTTTCTTTAAAG
CACAAAATCGAGTGATTTTGCGATGTTTTTTTCCCACCGGCGATCTGGGCCACGCCGGCC
ATCATCCCCCTCCCCCTCCTCCTCGGTAGGTGGCGACCACGGCGCTTTCTCCAGCCTTTG
TCGCTCGCGAGAAAACTTTCCGAGCTGCAAGTCTTTTGATGTAGGTCCAAAACCTTTCCT
TTGAACTTGGGTTCGCGGATTGGCGTTCCCCGTCTTCTTTCTTCCGTAGACCGCACCCTT
TCCTCATCTAGAAGTTCCACGGTGGGTTTCTTTAAAATAGATGGAGAATTTAAAGATCTC
TCCGAAGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCAATGGAGGCGCGGGTGGTGGGAGCGAGAACATGGCTGCACCTGGGGCCTGCGCGG
CCGCCCGAGTGGGGGAGGGGAGCTGGGGCGCAGGGGTGAAAATCCAGGCCGCGGGGAGCT
TCATCCTGTTTGCTGACGCGCTCCAGCCGGCCTCAGCCACCGTTCAAGGCTCGCACTCAC
TCTTGCCCCCGAGATTCCCTGCAAATTGAGAGGTCGGAACACTGCAAAGGCCGGGGCTCC
CCAGGCCGGCATGCCTCCTCCCAGGCTCAGCCAAGGGACTTCTCCGCCCTGCACCACCCT
CCAGGACACAAAGAACTGTTAGTTTTGAAAGCTTGCCTCAAAAGGGGCTATTGCCCCAAC
TTTGGACGGGCGAGGGAAGAGCACCCTTCTGTTTTTGTTTACCCCACCCTTAGGCTTTGC
TCACTTTTTCTTAACATTTAGAAGGGAAGTTAAGGAGGAAAAGCCAAGGAGGGGAGCAGA
AAACGTGATTTGCAGCCCGTTGTGTTCTGTCAACCGCTAAGCCGTCCCCTCCCCCCGGTA
ATTTTTTTGCATCTCAACTTTGATTAGCTCGTGAATTTCGAAAATGGTGAGACGCTAGTG
TACGCTCAAGTTAGAAGTTTTTAAAACTCGGGCCCAGAGATTTTAGATGTTTCTTTAAAG
CACAAAATCGAGTGATTTTGCGATGTTTTTTTCCCACCGGCGATCTGGGCCACGCCGGCC
ATCATCCCCCTCCCCCTCCTCCTCGGTAGGTGGCGACCACGGCGCTTTCTCCAGCCTTTG
TCGCTCGCGAGAAAACTTTCCGAGCTGCAAGTCTTTTGATGTAGGTCCAAAACCTTTCCT
TTGAACTTGGGTTCGCGGATTGGCGTTCCCCGTCTTCTTTCTTCCGTAGACCGCACCCTT
TCCTCATCTAGAAGTTCCACGGTGGGTTTCTTTAAAATAGATGGAGAATTTAAAGATCTC
TCCGAAGCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-156, + strand, RNAz p=0.589809

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-156, + strand, RNAz p=0.589809

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-970, gnl|bosTau2|chr25 (28682552-28681560)
               

               
               1-970, gnl|Hg17|chr7 (73516444-73515425)
               

               
               1-970, gnl|Mm7|chr5 (133564161-133565150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-970, gnl|bosTau2|chr25 (28682552-28681560)
               

               
               1-970, gnl|Hg17|chr7 (73516444-73515425)
               

               
               1-970, gnl|Mm7|chr5 (133564161-133565150)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-970, gnl\|bosTau2\|chr25 (28682552-28681560)
	1-970, gnl\|Hg17\|chr7 (73516444-73515425)
	1-970, gnl\|Mm7\|chr5 (133564161-133565150)