Non-Coding RNA Search

Ss1.1-Pig4-TMW8047F13.5

Sequence:


               
               CTGGTCAAGATCCTGAAGCTGATTATCAACGAGCTGTCCAACCTCCTGGAGGCCAGTGCT
GCCCGCCAGGCCGCCCCTGCAGAGTGGAGCCAAGATGACGCCAACGACATGTGGGAGGAC
CAGGAGGAGGACGACGAGGAGGAGGACGGCCTAGCTGGCCACCTCTTATCTGACATCCTT
GCCACAGAGGAGGACTACTATGAGGATGATGAGGACGATGACCCTGACGCCCTGAAGGAC
CCCCTCTATCAGATTGATCTGGAGGCATATCTCACAGACTTCCTCTGCCAGTTCGCTCAG
CAGCCCTGCTACGTTATGTTCTCGGGCCACCTTAACGACAACGAGAGGCGGGTTCTACAG
ACCATTGGCATCTAGAAGTCCCTCCTGGCCCGGCCACGATCCGTTTTGCAGCCCTCACTG
GCCTTGAGGTGCACTTTCATCTCAGCCTGGAGCGGCCTCCTGACTCAGCCTGCGGTCCCT
GCAGAGTGACACGGACAGTCCAGACCACACTCACCTGTGCTGTCGCTAGGAACGCCGGAA
CGAGGGACCTTTCCCCAAGAACCCTGAGGACACCTGTCTCTAGAACCTCTTCCTCCCCAG
CTGTGCCCCCATCCCTGTCCCCAGAGTCCTCTGCTGGCCCGTCCAGAAACGCAGGGCCCG
GAAGGACGGTGTGCTGTGGATGATCTTCCCGCCTCAGGGGCCCAGAAGTCAGACCGTTTG
TGTTCCAGACAGACCTGTGTGCTTTCAGAGGACATCGGATGTGATCGGACGGGAGTGCCC
TTGAGAGAGGATGGTGCCCTCTGCCCTCCCAGAGGCAAGACCGGGTCTCGGGGGAGCAAG
AAGAGGCAGCCCCGGGGACCGCCTGCTCCCTCGACGACACTAAGACTCCCGGCGAAGGAC
GTCACCTCGGTTCTGCCTCATCGCATGACACAGCCCCTCCCCTGAAGCTCCTCCTCTGTC
CACCTGCACGCACACGAGAGAGCCAGACAGATGGCAACCTGTTTTCCCTTTTTTAGGAAA
AAAAAAAATGGAGGAAAAACAGATTTTTTTTAAAAAGTCCACCTGACCCAACTATATTTA
ATATGCCCGTCCCCACACGTCACCACGCAGCCTGACATTCAGGGGTCCCCTCCCTCGGGA
ATGCTCTAAAGTGGTTCAGTTGTAGCCCTCAAATTTGCAATGTGTATTTTTCTAGGAGAG
TAAAGCAATCTTTACAAACGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTCAAGATCCTGAAGCTGATTATCAACGAGCTGTCCAACCTCCTGGAGGCCAGTGCT
GCCCGCCAGGCCGCCCCTGCAGAGTGGAGCCAAGATGACGCCAACGACATGTGGGAGGAC
CAGGAGGAGGACGACGAGGAGGAGGACGGCCTAGCTGGCCACCTCTTATCTGACATCCTT
GCCACAGAGGAGGACTACTATGAGGATGATGAGGACGATGACCCTGACGCCCTGAAGGAC
CCCCTCTATCAGATTGATCTGGAGGCATATCTCACAGACTTCCTCTGCCAGTTCGCTCAG
CAGCCCTGCTACGTTATGTTCTCGGGCCACCTTAACGACAACGAGAGGCGGGTTCTACAG
ACCATTGGCATCTAGAAGTCCCTCCTGGCCCGGCCACGATCCGTTTTGCAGCCCTCACTG
GCCTTGAGGTGCACTTTCATCTCAGCCTGGAGCGGCCTCCTGACTCAGCCTGCGGTCCCT
GCAGAGTGACACGGACAGTCCAGACCACACTCACCTGTGCTGTCGCTAGGAACGCCGGAA
CGAGGGACCTTTCCCCAAGAACCCTGAGGACACCTGTCTCTAGAACCTCTTCCTCCCCAG
CTGTGCCCCCATCCCTGTCCCCAGAGTCCTCTGCTGGCCCGTCCAGAAACGCAGGGCCCG
GAAGGACGGTGTGCTGTGGATGATCTTCCCGCCTCAGGGGCCCAGAAGTCAGACCGTTTG
TGTTCCAGACAGACCTGTGTGCTTTCAGAGGACATCGGATGTGATCGGACGGGAGTGCCC
TTGAGAGAGGATGGTGCCCTCTGCCCTCCCAGAGGCAAGACCGGGTCTCGGGGGAGCAAG
AAGAGGCAGCCCCGGGGACCGCCTGCTCCCTCGACGACACTAAGACTCCCGGCGAAGGAC
GTCACCTCGGTTCTGCCTCATCGCATGACACAGCCCCTCCCCTGAAGCTCCTCCTCTGTC
CACCTGCACGCACACGAGAGAGCCAGACAGATGGCAACCTGTTTTCCCTTTTTTAGGAAA
AAAAAAAATGGAGGAAAAACAGATTTTTTTTAAAAAGTCCACCTGACCCAACTATATTTA
ATATGCCCGTCCCCACACGTCACCACGCAGCCTGACATTCAGGGGTCCCCTCCCTCGGGA
ATGCTCTAAAGTGGTTCAGTTGTAGCCCTCAAATTTGCAATGTGTATTTTTCTAGGAGAG
TAAAGCAATCTTTACAAACGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55589054|ref|XP_514098.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55589054|ref|XP_514098.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               263-459, gnl|bosTau2|chr16 (48666729-48666536)
               

               
               263-459, gnl|Hg17|chr1 (198576727-198576965)
               

               
               263-459, gnl|Mm7|chr1 (135275264-135275040)
               


               
               625-1221, gnl|bosTau2|chr16 (48666443-48665860)
               

               
               625-1221, gnl|Hg17|chr1 (198577116-198577746)
               

               
               625-1221, gnl|Mm7|chr1 (135274894-135274259)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               263-459, gnl|bosTau2|chr16 (48666729-48666536)
               

               
               263-459, gnl|Hg17|chr1 (198576727-198576965)
               

               
               263-459, gnl|Mm7|chr1 (135275264-135275040)
               


               
               625-1221, gnl|bosTau2|chr16 (48666443-48665860)
               

               
               625-1221, gnl|Hg17|chr1 (198577116-198577746)
               

               
               625-1221, gnl|Mm7|chr1 (135274894-135274259)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fty (0.351679)
               

               
               ill (0.351185)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	263-459, gnl\|bosTau2\|chr16 (48666729-48666536)
	263-459, gnl\|Hg17\|chr1 (198576727-198576965)
	263-459, gnl\|Mm7\|chr1 (135275264-135275040)

	625-1221, gnl\|bosTau2\|chr16 (48666443-48665860)
	625-1221, gnl\|Hg17\|chr1 (198577116-198577746)
	625-1221, gnl\|Mm7\|chr1 (135274894-135274259)

	fty (0.351679)
	ill (0.351185)
	cli (0.152812)
	lnt (0.142308)
	cst (0.140036)
	pla (0.133672)
	cov (0.132153)
	eru (0.120048)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)