Ss1.1-Pig4-TMW8047F16.5
|
GCCTTCCTGGGTGCACCCTGTTTATCAAAAATCTCAACTTCAGCACCACGGAGGAGACGC
TGAAGGGAGTGTTTTCCAAAGTGGGTGCGGTGAAGAGCTGCTCCATTTCCAAGAAGAAGA
ACAAAGCAGGAGCACTGCTGTCCATGGGGTTTGGATTTGTGGAGTATAAGAAGCCAGAGC
AGGCCCAGAAAGCTCTCAAGCAGCTCCAGGGTCACGTTGTGGATGGCCACAAGCTGGAAG
TGAGGATCTCGGAACGAGCCACCAAGCCAGCCCCAACAGCCACTCGGAAGAAGCAAGTAG
CCAGAAAGCAGACCACGTCCAAGATCCTGGTGCGGAACATCCCCTTCCAGGCCGACAGCC
GCGAGATCCGCGAGCTCTTCAGCACCTTCGGGGAGCTGAAGACCGTCCGCCTGCCGAAGA
AGATGACTGGGACAGGCACGCACAGAGGGTTCGGCTTCGTTGACTTCTTCACCAAGCAGG
ACGCGAAGAGAGCCTTCAATGCCCTGTGTCACAGCACCCACTTGTATGGCAGGAGGCTGG
TCCTGGAGTGGGCCGACTCCGAGGTGACCCTGCAAGCCCTGCGGCGGAAGACGGCCGAGC
ACTTCCACGAGCCCCCGAAGAAAAAGCGGTCTGTGGTGTTGGACGAGATCCTGGAGCAGC
TGGAAGACAGTGAGAACGATGGCGAGGAGCAGACTCTTCAGCTGTGAGCTGGCACCAGGA
GGGGCTGCTAAGCTGGAGTTCCCACCTCCGTCTGTCCAAGGACGACTCGCAGCCTGGGAC
TTGACCTCTGACCTGCCGCATCCTCGCCCCTGAGGGCTGTGAGCCCTTAGTCACCAGAGC
ACCTTGTGTCCATGGTGACCATGGGGCCACTCACAAAGCCCCAACTCCAAGCCCAGCTGC
CAGGTTCATTGGTTGAGCTCAGCTGTGTTGCTAACGGTGAATGCCTTTGGCTCACGGACT
GGGGACCCAATGAAATGCCATCAGGTCCCCAGCCCTGGCAAGCAGCACCCCAAGGCTCAT
CCCAGATTTGGGGGCACCCACAGGCCCACACCTACTCCTGCCTGGAGGTTTGTACCCAGC
ACACGCCAGGATGGGGACAGTGGAGAGAAAAGGGCTGTGGCCCATGTGCCCTGGGACCAG
CTGGGGCCACTCTGAGCCTCAGCTTCTCTCTCTGTAAGGTGAGGGATCTCGTGCCTACCT
CAGACATGGTGCTTGGACTCCTTCATCAATCCAAGTAAAGCCAGAACAAGTGCTCATCAG
CGTTTCTATTTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCTTCCTGGGTGCACCCTGTTTATCAAAAATCTCAACTTCAGCACCACGGAGGAGACGC
TGAAGGGAGTGTTTTCCAAAGTGGGTGCGGTGAAGAGCTGCTCCATTTCCAAGAAGAAGA
ACAAAGCAGGAGCACTGCTGTCCATGGGGTTTGGATTTGTGGAGTATAAGAAGCCAGAGC
AGGCCCAGAAAGCTCTCAAGCAGCTCCAGGGTCACGTTGTGGATGGCCACAAGCTGGAAG
TGAGGATCTCGGAACGAGCCACCAAGCCAGCCCCAACAGCCACTCGGAAGAAGCAAGTAG
CCAGAAAGCAGACCACGTCCAAGATCCTGGTGCGGAACATCCCCTTCCAGGCCGACAGCC
GCGAGATCCGCGAGCTCTTCAGCACCTTCGGGGAGCTGAAGACCGTCCGCCTGCCGAAGA
AGATGACTGGGACAGGCACGCACAGAGGGTTCGGCTTCGTTGACTTCTTCACCAAGCAGG
ACGCGAAGAGAGCCTTCAATGCCCTGTGTCACAGCACCCACTTGTATGGCAGGAGGCTGG
TCCTGGAGTGGGCCGACTCCGAGGTGACCCTGCAAGCCCTGCGGCGGAAGACGGCCGAGC
ACTTCCACGAGCCCCCGAAGAAAAAGCGGTCTGTGGTGTTGGACGAGATCCTGGAGCAGC
TGGAAGACAGTGAGAACGATGGCGAGGAGCAGACTCTTCAGCTGTGAGCTGGCACCAGGA
GGGGCTGCTAAGCTGGAGTTCCCACCTCCGTCTGTCCAAGGACGACTCGCAGCCTGGGAC
TTGACCTCTGACCTGCCGCATCCTCGCCCCTGAGGGCTGTGAGCCCTTAGTCACCAGAGC
ACCTTGTGTCCATGGTGACCATGGGGCCACTCACAAAGCCCCAACTCCAAGCCCAGCTGC
CAGGTTCATTGGTTGAGCTCAGCTGTGTTGCTAACGGTGAATGCCTTTGGCTCACGGACT
GGGGACCCAATGAAATGCCATCAGGTCCCCAGCCCTGGCAAGCAGCACCCCAAGGCTCAT
CCCAGATTTGGGGGCACCCACAGGCCCACACCTACTCCTGCCTGGAGGTTTGTACCCAGC
ACACGCCAGGATGGGGACAGTGGAGAGAAAAGGGCTGTGGCCCATGTGCCCTGGGACCAG
CTGGGGCCACTCTGAGCCTCAGCTTCTCTCTCTGTAAGGTGAGGGATCTCGTGCCTACCT
CAGACATGGTGCTTGGACTCCTTCATCAATCCAAGTAAAGCCAGAACAAGTGCTCATCAG
CGTTTCTATTTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
937-1045, - strand, RNAmicro p=0.999991 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
937-1045, - strand, RNAmicro p=0.999991 |
|
487-609, gnl|bosTau2|chr17 (36663569-36663447) |
|
487-609, gnl|canFam2|chr26 (14090191-14090326) |
|
487-609, gnl|danRer3|chr17 (37283319-37283188) |
|
487-609, gnl|echTel1|scaffold_324769 (5892-6023) |
|
487-609, gnl|hg17|chr12 (112745186-112745320) |
|
487-609, gnl|Hg17|chr12 (112745315-112745193) |
|
487-609, gnl|loxAfr1|scaffold_9140 (64457-64319) |
|
487-609, gnl|mm7|chr5 (119420333-119420199) |
|
487-609, gnl|Mm7|chr5 (119420202-119420324) |
|
487-609, gnl|monDom2|scaffold_110 (2299304-2299435) |
|
487-609, gnl|oryCun1|scaffold_215298 (56577-56711) |
|
487-609, gnl|panTro1|chr10_random (4909905-4910039) |
|
487-609, gnl|rheMac2|chr11 (114770461-114770595) |
|
487-609, gnl|rn3|chr12 (37496111-37496245) |
|
487-609, gnl|tetNig1|chr12 (6134727-6134856) |
| |
|
722-1026, gnl|bosTau2|chr17 (36643707-36643402) |
|
722-1026, gnl|Hg17|chr12 (112723172-112722865) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
487-609, gnl|bosTau2|chr17 (36663569-36663447) |
|
487-609, gnl|canFam2|chr26 (14090191-14090326) |
|
487-609, gnl|danRer3|chr17 (37283319-37283188) |
|
487-609, gnl|echTel1|scaffold_324769 (5892-6023) |
|
487-609, gnl|hg17|chr12 (112745186-112745320) |
|
487-609, gnl|Hg17|chr12 (112745315-112745193) |
|
487-609, gnl|loxAfr1|scaffold_9140 (64457-64319) |
|
487-609, gnl|mm7|chr5 (119420333-119420199) |
|
487-609, gnl|Mm7|chr5 (119420202-119420324) |
|
487-609, gnl|monDom2|scaffold_110 (2299304-2299435) |
|
487-609, gnl|oryCun1|scaffold_215298 (56577-56711) |
|
487-609, gnl|panTro1|chr10_random (4909905-4910039) |
|
487-609, gnl|rheMac2|chr11 (114770461-114770595) |
|
487-609, gnl|rn3|chr12 (37496111-37496245) |
|
487-609, gnl|tetNig1|chr12 (6134727-6134856) |
| |
|
722-1026, gnl|bosTau2|chr17 (36643707-36643402) |
|
722-1026, gnl|Hg17|chr12 (112723172-112722865) |
|
amn (0.417711) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
amn (0.417711) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
