Ss1.1-Pig4-TMW8047F18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCCAAGCTGCAAGGCCCTGTACGACTTTGAGCCTGAGAATGACGGGGAGCTGGGCTT CCACGAGGGCGACATCATCACCCTGACCAACCAGATCGACGAGAACTGGTACGAGGGCAT GCTCCATGGCCAGTCTGGCTTCTTCCCGCTCAGCTACGTGGAGGTGCTGGTGCCACTGCC CCAGTGACAGCGTCTCGGTGACACACTGGCCCACCTGCCCCTCCGTCCAGATCTCTGCAT TCCACAGGCCCGTGGCGAGGGCAGAGCTCGCAGCCTGCAGGGTGGCCTCCTCCCCACCTG GACCAGGGGCATGGGGCCCCTGTTTACACTAGCGATAACCCCCGGTGGGGGCTCCCTTCC CCACTCCACGTGGCCATCTTGGGGGCTGGGCAGTGTTCCTCTTCCTGCTGCTCGCTGACT GCCCCCCAGCCCCGCCCAAGGGGGCTCACACTAAGGTGCTCTTAGAAACACTAACTCCTC CTGCCCCCTCCAGGGACTGGTAACGCCAGGTGGGCCCCCTTCACATACTCGCACCCACAC TGTCCTCTCGCCACCCTGTGTTCCTCCATCTGGAGACCTGCCCTCAACAGGATGGAACTG AACATCTGTATGATGGCTGGTCTGGGCGGGACCCCTGGCTGAGACTCACCACCCTGCTTT TAAATTGCCCCAGGAAACTCCTCCCAGGGCCCCTGAACACCTACAGATGCCACCTACCTG GGAAGGCCTCACCCTTTCCCTCCAGGCCAGGCGCTTGGGGAGAGACGAGCCTGGGGTCCT CAGGGGCCTTCTCGGCAGCACTCAGGTGGCCATGTCTCCCTCCTGCAGGCTGCTGAGTCC CACACCCCACACTGGGCCAAGCACAACCTACCACCACCAGCACGTGCTCACACTCACACT CACACACACACACACACACACACACACACACGGGACCACGGGAGCCCAGCCTCCACTCTG GAAGGTCAAGCACAAAGGCTTTGATAAGTGAATGTCCCCAGGACCCCTGGGGCCCTATGG GGGAGTCACGGGCATCTCTTGGTCCTGAGCCAATCACCATACCCCTTTGGACAGTGGTCC AGGCTATCTCCTCCAGACCAAGGTAGGCAGTTGCCCGGACCAGCAGGGCCCCAGCCCTGC ACCCACTTCCTCTCTTGCCTAGTCCAAAAGCTGGCTAAACAGGGGACCCCGGGGCCTGAT TCACATTCCCCTCCTCTGGTGACCTGGTAAAGCCCTCAAGGACACCAGGCTCTCCCTGCT CACCCCCGAGGCCCCCTGGTTGCCAGTACATGGAGGAGGCACAGACATCACGGCCTAGGG CAGACTGAAATGTAATCCTGATTTTTTTAAAAAAAGAAGTATTAAACGTCTCTTTCTACA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCCAAGCTGCAAGGCCCTGTACGACTTTGAGCCTGAGAATGACGGGGAGCTGGGCTT CCACGAGGGCGACATCATCACCCTGACCAACCAGATCGACGAGAACTGGTACGAGGGCAT GCTCCATGGCCAGTCTGGCTTCTTCCCGCTCAGCTACGTGGAGGTGCTGGTGCCACTGCC CCAGTGACAGCGTCTCGGTGACACACTGGCCCACCTGCCCCTCCGTCCAGATCTCTGCAT TCCACAGGCCCGTGGCGAGGGCAGAGCTCGCAGCCTGCAGGGTGGCCTCCTCCCCACCTG GACCAGGGGCATGGGGCCCCTGTTTACACTAGCGATAACCCCCGGTGGGGGCTCCCTTCC CCACTCCACGTGGCCATCTTGGGGGCTGGGCAGTGTTCCTCTTCCTGCTGCTCGCTGACT GCCCCCCAGCCCCGCCCAAGGGGGCTCACACTAAGGTGCTCTTAGAAACACTAACTCCTC CTGCCCCCTCCAGGGACTGGTAACGCCAGGTGGGCCCCCTTCACATACTCGCACCCACAC TGTCCTCTCGCCACCCTGTGTTCCTCCATCTGGAGACCTGCCCTCAACAGGATGGAACTG AACATCTGTATGATGGCTGGTCTGGGCGGGACCCCTGGCTGAGACTCACCACCCTGCTTT TAAATTGCCCCAGGAAACTCCTCCCAGGGCCCCTGAACACCTACAGATGCCACCTACCTG GGAAGGCCTCACCCTTTCCCTCCAGGCCAGGCGCTTGGGGAGAGACGAGCCTGGGGTCCT CAGGGGCCTTCTCGGCAGCACTCAGGTGGCCATGTCTCCCTCCTGCAGGCTGCTGAGTCC CACACCCCACACTGGGCCAAGCACAACCTACCACCACCAGCACGTGCTCACACTCACACT CACACACACACACACACACACACACACACACGGGACCACGGGAGCCCAGCCTCCACTCTG GAAGGTCAAGCACAAAGGCTTTGATAAGTGAATGTCCCCAGGACCCCTGGGGCCCTATGG GGGAGTCACGGGCATCTCTTGGTCCTGAGCCAATCACCATACCCCTTTGGACAGTGGTCC AGGCTATCTCCTCCAGACCAAGGTAGGCAGTTGCCCGGACCAGCAGGGCCCCAGCCCTGC ACCCACTTCCTCTCTTGCCTAGTCCAAAAGCTGGCTAAACAGGGGACCCCGGGGCCTGAT TCACATTCCCCTCCTCTGGTGACCTGGTAAAGCCCTCAAGGACACCAGGCTCTCCCTGCT CACCCCCGAGGCCCCCTGGTTGCCAGTACATGGAGGAGGCACAGACATCACGGCCTAGGG CAGACTGAAATGTAATCCTGATTTTTTTAAAAAAAGAAGTATTAAACGTCTCTTTCTACA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 420-1281, + strand, RNAz p=0.99244 | |
| 576-691, - strand, RNAz p=0.975587 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 420-1281, + strand, RNAz p=0.99244 | |
| 576-691, - strand, RNAz p=0.975587 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-185, gnl|bosTau2|chr21 (16773551-16773367) | |
| 1-185, gnl|canFam2|chr3 (58202828-58203022) | |
| 1-185, gnl|danRer3|chr8 (13687472-13687660) | |
| 1-185, gnl|dasNov1|scaffold_19619 (43018-43212) | |
| 1-185, gnl|echTel1|scaffold_216442 (4118-3927) | |
| 1-185, gnl|fr1|chrUn (215850907-215850714) | |
| 1-185, gnl|galGal2|chr10 (12044313-12044507) | |
| 1-185, gnl|hg17|chr15 (82077850-82078044) | |
| 1-185, gnl|Hg17|chr15 (82077857-82078041) | |
| 1-185, gnl|loxAfr1|scaffold_75045 (6403-6597) | |
| 1-185, gnl|mm7|chr7 (78228475-78228669) | |
| 1-185, gnl|Mm7|chr7 (78228482-78228666) | |
| 1-185, gnl|monDom2|scaffold_45 (2616041-2616235) | |
| 1-185, gnl|oryCun1|scaffold_174006 (22498-22691) | |
| 1-185, gnl|panTro1|chr16 (82879406-82879600) | |
| 1-185, gnl|rheMac2|chr7 (62896521-62896327) | |
| 1-185, gnl|rn3|chr1 (138607217-138607411) | |
| 1-185, gnl|tetNig1|chrUn_random (32814918-32814727) | |
| 1-185, gnl|xenTro1|scaffold_789 (551748-551554) | |
| 218-535, gnl|bosTau2|chr7 (15024168-15023857) | |
| 218-535, gnl|Hg17|chr19 (4312575-4312240) | |
| 537-906, gnl|bosTau2|chr7 (15023747-15023387) | |
| 537-906, gnl|Hg17|chr19 (4312222-4311828) | |
| 1180-1380, gnl|bosTau2|chr7 (15023136-15022940) | |
| 1180-1380, gnl|canFam2|chr20 (58257702-58258238) | |
| 1180-1380, gnl|canFam2|chr20 (58257887-58258238) | |
| 1180-1380, gnl|echTel1|scaffold_247757 (10694-10280) | |
| 1180-1380, gnl|echTel1|scaffold_247757 (10557-10280) | |
| 1180-1380, gnl|hg17|chr17 (25977414-25977952) | |
| 1180-1380, gnl|hg17|chr17_random (1164084-1164447) | |
| 1180-1380, gnl|Hg17|chr19 (4311596-4311367) | |
| 1180-1380, gnl|mm7|chr17 (54176542-54176100) | |
| 1180-1380, gnl|mm7|chr17 (54176425-54176100) | |
| 1180-1380, gnl|Mm7|chr17 (54176284-54176094) | |
| 1180-1380, gnl|panTro1|chr19 (66934485-66934113) | |
| 1180-1380, gnl|panTro1|chr19_random (14388906-14389446) | |
| 1180-1380, gnl|rheMac2|chr16 (55643651-55643114) | |
| 1180-1380, gnl|rheMac2|chr16 (63443673-63443312) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-185, gnl|bosTau2|chr21 (16773551-16773367) | |
| 1-185, gnl|canFam2|chr3 (58202828-58203022) | |
| 1-185, gnl|danRer3|chr8 (13687472-13687660) | |
| 1-185, gnl|dasNov1|scaffold_19619 (43018-43212) | |
| 1-185, gnl|echTel1|scaffold_216442 (4118-3927) | |
| 1-185, gnl|fr1|chrUn (215850907-215850714) | |
| 1-185, gnl|galGal2|chr10 (12044313-12044507) | |
| 1-185, gnl|hg17|chr15 (82077850-82078044) | |
| 1-185, gnl|Hg17|chr15 (82077857-82078041) | |
| 1-185, gnl|loxAfr1|scaffold_75045 (6403-6597) | |
| 1-185, gnl|mm7|chr7 (78228475-78228669) | |
| 1-185, gnl|Mm7|chr7 (78228482-78228666) | |
| 1-185, gnl|monDom2|scaffold_45 (2616041-2616235) | |
| 1-185, gnl|oryCun1|scaffold_174006 (22498-22691) | |
| 1-185, gnl|panTro1|chr16 (82879406-82879600) | |
| 1-185, gnl|rheMac2|chr7 (62896521-62896327) | |
| 1-185, gnl|rn3|chr1 (138607217-138607411) | |
| 1-185, gnl|tetNig1|chrUn_random (32814918-32814727) | |
| 1-185, gnl|xenTro1|scaffold_789 (551748-551554) | |
| 218-535, gnl|bosTau2|chr7 (15024168-15023857) | |
| 218-535, gnl|Hg17|chr19 (4312575-4312240) | |
| 537-906, gnl|bosTau2|chr7 (15023747-15023387) | |
| 537-906, gnl|Hg17|chr19 (4312222-4311828) | |
| 1180-1380, gnl|bosTau2|chr7 (15023136-15022940) | |
| 1180-1380, gnl|canFam2|chr20 (58257702-58258238) | |
| 1180-1380, gnl|canFam2|chr20 (58257887-58258238) | |
| 1180-1380, gnl|echTel1|scaffold_247757 (10694-10280) | |
| 1180-1380, gnl|echTel1|scaffold_247757 (10557-10280) | |
| 1180-1380, gnl|hg17|chr17 (25977414-25977952) | |
| 1180-1380, gnl|hg17|chr17_random (1164084-1164447) | |
| 1180-1380, gnl|Hg17|chr19 (4311596-4311367) | |
| 1180-1380, gnl|mm7|chr17 (54176542-54176100) | |
| 1180-1380, gnl|mm7|chr17 (54176425-54176100) | |
| 1180-1380, gnl|Mm7|chr17 (54176284-54176094) | |
| 1180-1380, gnl|panTro1|chr19 (66934485-66934113) | |
| 1180-1380, gnl|panTro1|chr19_random (14388906-14389446) | |
| 1180-1380, gnl|rheMac2|chr16 (55643651-55643114) | |
| 1180-1380, gnl|rheMac2|chr16 (63443673-63443312) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| pla (0.401016) | |
| nca (0.273748) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| nca (0.273748) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |