Ss1.1-Pig4-TMW8047F19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTGGCCCCGGCCCTAGCTCGTCGGCGGTGTGTTGGGGCGCGTGGAGGCTACAGTCAC GGTGGCGCCCGCGGGGACGGAGGAGGGAATGAGTGAAGAGGAGCAGGGCTCCGGCACTAC CACGGGCTGCGGGCTGCCCAGTATAGAGCAAATGCTGGCAGCCAACCCGGGCAAGACCCC GATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGGAAGACGCCCGTGTACGACCTTCT CAAAGCCGAGGGCCAAGCCCACCAGCCTAATTTCACCTTCCGGGTCACCGTTGGCGACAC CAGCTGCACTGGTCAGGGCCCCAGCAAGAAGGCAGCCAAGCACAAGGCAGCTGAGGTGGC CCTCAAACACCTCAAAGGGGGGAGCATGCTGGAGCCGGCCCTGGAGGACAGCAGTTCTTT TTCTCCCCTAGACTCTTCGCTGCCTGAAGACGTGCCGGTTTTTACTACTACAGCCGCTGC TACTCCCATTCCATCTGCTGTTGCAACCAGGAGCCCCCCCATGGAGGTGCAGCCCCCCGT GTCCCCTCAGCAGTCTGAGTGCAACCCTGTTGGCGCTCTGCAGGAGCTGGTGGTACAGAA AGGCTGGCGGTTGCCAGAGTACACGGTGACCCAGGAGTCTGGGCCAGCCCACCGCAAAGA GTTTACCATGACCTGCCGAGTGGAGCGTTTCATTGAGATTGGCAGCGGCACTTCCAAAAA GCTGGCAAAGCGTAATGCAGCGGCCAAAATGCTGCTTCGAGTGCACACGGTGCCTCTGGA TGCCCGGGATGGGAACGAGGCGGAGCCTGATGACGATCACTTCTCCCTTGGTGTGGGCTC CCGTCTAGATGGACTTCGGAACCGGGGCCCAGGCTGCACCTGGGATTCTCTGCGCAATTC GGTGGGAGAGAAGATCCTGTCCCTCCGCAGCTGCTCCCTGGGCTCCTTGGGCGCCCTGGG CCCTGCCTGCTGCAGCGTCCTCAGCGAGCTGTCTGAGGAGCAGGCCTTCCATGTCAGCTA CCTGGACATTGAGGAGTTGAGCCTGAGTGGCCTCTGCCAGTGCCTGGTGGAGCTGTCCAC ACAGCCAGCCACCGTGTGTCACGGCTCTGCAACCACCAGGGAGGCAGCCCGTGGTGAGGC TGCACGCCGCGCCCTGCAGTACCTCAAGATCATGGCGGGCAGCAAGTGAAGCCCCAGCTG GACTCATGGACATACATCGTTTGCTCCCTGCTCTTCCTGCCCCTGGCCCACGCATCTGCC CGGCTCTGGTACCCCCGGAGGTGCCATCTCTACCTCTGACACAGACTGCCTGCCTGCAGG CTGAGGAGGGCACAGGGCCAGGAGCCTGGGACCATGGGGCCTCGGCTGGCCCAGGTTCTG TCCTCACGTTACTGGTGATGACAAAGAGGAATGAAATCGGGGCAGGGGGCTCTTCAGTAA GAAAGAGCCCCAAATAAATGTGCTGCTTTTTGGATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTGGCCCCGGCCCTAGCTCGTCGGCGGTGTGTTGGGGCGCGTGGAGGCTACAGTCAC GGTGGCGCCCGCGGGGACGGAGGAGGGAATGAGTGAAGAGGAGCAGGGCTCCGGCACTAC CACGGGCTGCGGGCTGCCCAGTATAGAGCAAATGCTGGCAGCCAACCCGGGCAAGACCCC GATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGGAAGACGCCCGTGTACGACCTTCT CAAAGCCGAGGGCCAAGCCCACCAGCCTAATTTCACCTTCCGGGTCACCGTTGGCGACAC CAGCTGCACTGGTCAGGGCCCCAGCAAGAAGGCAGCCAAGCACAAGGCAGCTGAGGTGGC CCTCAAACACCTCAAAGGGGGGAGCATGCTGGAGCCGGCCCTGGAGGACAGCAGTTCTTT TTCTCCCCTAGACTCTTCGCTGCCTGAAGACGTGCCGGTTTTTACTACTACAGCCGCTGC TACTCCCATTCCATCTGCTGTTGCAACCAGGAGCCCCCCCATGGAGGTGCAGCCCCCCGT GTCCCCTCAGCAGTCTGAGTGCAACCCTGTTGGCGCTCTGCAGGAGCTGGTGGTACAGAA AGGCTGGCGGTTGCCAGAGTACACGGTGACCCAGGAGTCTGGGCCAGCCCACCGCAAAGA GTTTACCATGACCTGCCGAGTGGAGCGTTTCATTGAGATTGGCAGCGGCACTTCCAAAAA GCTGGCAAAGCGTAATGCAGCGGCCAAAATGCTGCTTCGAGTGCACACGGTGCCTCTGGA TGCCCGGGATGGGAACGAGGCGGAGCCTGATGACGATCACTTCTCCCTTGGTGTGGGCTC CCGTCTAGATGGACTTCGGAACCGGGGCCCAGGCTGCACCTGGGATTCTCTGCGCAATTC GGTGGGAGAGAAGATCCTGTCCCTCCGCAGCTGCTCCCTGGGCTCCTTGGGCGCCCTGGG CCCTGCCTGCTGCAGCGTCCTCAGCGAGCTGTCTGAGGAGCAGGCCTTCCATGTCAGCTA CCTGGACATTGAGGAGTTGAGCCTGAGTGGCCTCTGCCAGTGCCTGGTGGAGCTGTCCAC ACAGCCAGCCACCGTGTGTCACGGCTCTGCAACCACCAGGGAGGCAGCCCGTGGTGAGGC TGCACGCCGCGCCCTGCAGTACCTCAAGATCATGGCGGGCAGCAAGTGAAGCCCCAGCTG GACTCATGGACATACATCGTTTGCTCCCTGCTCTTCCTGCCCCTGGCCCACGCATCTGCC CGGCTCTGGTACCCCCGGAGGTGCCATCTCTACCTCTGACACAGACTGCCTGCCTGCAGG CTGAGGAGGGCACAGGGCCAGGAGCCTGGGACCATGGGGCCTCGGCTGGCCCAGGTTCTG TCCTCACGTTACTGGTGATGACAAAGAGGAATGAAATCGGGGCAGGGGGCTCTTCAGTAA GAAAGAGCCCCAAATAAATGTGCTGCTTTTTGGATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 582-1149, + strand, RNAz p=0.637422 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 582-1149, + strand, RNAz p=0.637422 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_134324, + |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 137-317, gnl|bosTau2|chr5 (18953852-18953672) | |
| 137-317, gnl|canFam2|chr27 (4720345-4720170) | |
| 137-317, gnl|canFam2|chr27 (4720379-4720165) | |
| 137-317, gnl|danRer3|chr21 (38143584-38143756) | |
| 137-317, gnl|danRer3|chr21 (38143555-38143761) | |
| 137-317, gnl|dasNov1|scaffold_54814 (6362-6189) | |
| 137-317, gnl|dasNov1|scaffold_54814 (6385-6182) | |
| 137-317, gnl|echTel1|scaffold_291956 (10770-10595) | |
| 137-317, gnl|echTel1|scaffold_310928 (39270-39472) | |
| 137-317, gnl|fr1|chrUn (260624748-260624923) | |
| 137-317, gnl|fr1|chrUn (260624744-260624928) | |
| 137-317, gnl|hg17|chr12 (52182039-52182242) | |
| 137-317, gnl|Hg17|chr12 (52182061-52182241) | |
| 137-317, gnl|hg17|chr8 (104740676-104740845) | |
| 137-317, gnl|loxAfr1|scaffold_1915 (18824-18999) | |
| 137-317, gnl|loxAfr1|scaffold_1915 (18800-19004) | |
| 137-317, gnl|mm7|chr15 (102505275-102505450) | |
| 137-317, gnl|mm7|chr15 (102505254-102505455) | |
| 137-317, gnl|Mm7|chr15 (102505274-102505454) | |
| 137-317, gnl|oryCun1|scaffold_160311 (5480-5307) | |
| 137-317, gnl|oryCun1|scaffold_160311 (5505-5302) | |
| 137-317, gnl|panTro1|chr10 (53427097-53427300) | |
| 137-317, gnl|panTro1|chr7 (107119493-107119664) | |
| 137-317, gnl|rheMac2|chr11 (50577494-50577697) | |
| 137-317, gnl|rheMac2|chr8 (106162472-106162645) | |
| 137-317, gnl|rn3|chr8 (128785024-128785198) | |
| 137-317, gnl|rn3|chr8 (128785003-128785197) | |
| 137-317, gnl|tetNig1|chr11 (2560543-2560368) | |
| 137-317, gnl|tetNig1|chr11 (2560547-2560370) | |
| 137-317, gnl|xenTro1|scaffold_280 (819374-819199) | |
| 137-317, gnl|xenTro1|scaffold_280 (819391-819195) | |
| 582-702, gnl|bosTau2|chr5 (18951213-18951093) | |
| 582-702, gnl|canFam2|chr27 (4717760-4717680) | |
| 582-702, gnl|canFam2|chr27 (4717762-4717674) | |
| 582-702, gnl|danRer3|chr6 (29202348-29202268) | |
| 582-702, gnl|danRer3|chr6 (29202348-29202262) | |
| 582-702, gnl|dasNov1|scaffold_54814 (3800-3720) | |
| 582-702, gnl|dasNov1|scaffold_54814 (3802-3714) | |
| 582-702, gnl|echTel1|scaffold_291956 (10357-10292) | |
| 582-702, gnl|echTel1|scaffold_310928 (41754-41844) | |
| 582-702, gnl|fr1|chrUn (260625370-260625450) | |
| 582-702, gnl|fr1|chrUn (260625368-260625456) | |
| 582-702, gnl|hg17|chr12 (52184746-52184834) | |
| 582-702, gnl|Hg17|chr12 (52184747-52184867) | |
| 582-702, gnl|hg17|chr8 (104741116-104741196) | |
| 582-702, gnl|loxAfr1|scaffold_1915 (21176-21256) | |
| 582-702, gnl|loxAfr1|scaffold_1915 (21174-21262) | |
| 582-702, gnl|mm7|chr15 (102508137-102508217) | |
| 582-702, gnl|mm7|chr15 (102508135-102508223) | |
| 582-702, gnl|Mm7|chr15 (102508136-102508256) | |
| 582-702, gnl|panTro1|chr10 (53429805-53429893) | |
| 582-702, gnl|panTro1|chr7 (107119935-107120015) | |
| 582-702, gnl|rheMac2|chr11 (50580175-50580263) | |
| 582-702, gnl|rheMac2|chr8 (106162916-106162996) | |
| 582-702, gnl|rn3|chr8 (128785336-128785417) | |
| 582-702, gnl|rn3|chr8 (128785336-128785423) | |
| 582-702, gnl|tetNig1|chr11 (2559924-2559844) | |
| 582-702, gnl|tetNig1|chr11 (2559926-2559838) | |
| 582-702, gnl|xenTro1|scaffold_280 (815731-815651) | |
| 582-702, gnl|xenTro1|scaffold_280 (808906-808819) | |
| 1031-1476, gnl|bosTau2|chr5 (18949668-18949241) | |
| 1031-1476, gnl|Hg17|chr12 (52186041-52186477) | |
| 1031-1476, gnl|Mm7|chr15 (102509341-102509757) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-317, gnl|bosTau2|chr5 (18953852-18953672) | |
| 137-317, gnl|canFam2|chr27 (4720345-4720170) | |
| 137-317, gnl|canFam2|chr27 (4720379-4720165) | |
| 137-317, gnl|danRer3|chr21 (38143584-38143756) | |
| 137-317, gnl|danRer3|chr21 (38143555-38143761) | |
| 137-317, gnl|dasNov1|scaffold_54814 (6362-6189) | |
| 137-317, gnl|dasNov1|scaffold_54814 (6385-6182) | |
| 137-317, gnl|echTel1|scaffold_291956 (10770-10595) | |
| 137-317, gnl|echTel1|scaffold_310928 (39270-39472) | |
| 137-317, gnl|fr1|chrUn (260624748-260624923) | |
| 137-317, gnl|fr1|chrUn (260624744-260624928) | |
| 137-317, gnl|hg17|chr12 (52182039-52182242) | |
| 137-317, gnl|Hg17|chr12 (52182061-52182241) | |
| 137-317, gnl|hg17|chr8 (104740676-104740845) | |
| 137-317, gnl|loxAfr1|scaffold_1915 (18824-18999) | |
| 137-317, gnl|loxAfr1|scaffold_1915 (18800-19004) | |
| 137-317, gnl|mm7|chr15 (102505275-102505450) | |
| 137-317, gnl|mm7|chr15 (102505254-102505455) | |
| 137-317, gnl|Mm7|chr15 (102505274-102505454) | |
| 137-317, gnl|oryCun1|scaffold_160311 (5480-5307) | |
| 137-317, gnl|oryCun1|scaffold_160311 (5505-5302) | |
| 137-317, gnl|panTro1|chr10 (53427097-53427300) | |
| 137-317, gnl|panTro1|chr7 (107119493-107119664) | |
| 137-317, gnl|rheMac2|chr11 (50577494-50577697) | |
| 137-317, gnl|rheMac2|chr8 (106162472-106162645) | |
| 137-317, gnl|rn3|chr8 (128785024-128785198) | |
| 137-317, gnl|rn3|chr8 (128785003-128785197) | |
| 137-317, gnl|tetNig1|chr11 (2560543-2560368) | |
| 137-317, gnl|tetNig1|chr11 (2560547-2560370) | |
| 137-317, gnl|xenTro1|scaffold_280 (819374-819199) | |
| 137-317, gnl|xenTro1|scaffold_280 (819391-819195) | |
| 582-702, gnl|bosTau2|chr5 (18951213-18951093) | |
| 582-702, gnl|canFam2|chr27 (4717760-4717680) | |
| 582-702, gnl|canFam2|chr27 (4717762-4717674) | |
| 582-702, gnl|danRer3|chr6 (29202348-29202268) | |
| 582-702, gnl|danRer3|chr6 (29202348-29202262) | |
| 582-702, gnl|dasNov1|scaffold_54814 (3800-3720) | |
| 582-702, gnl|dasNov1|scaffold_54814 (3802-3714) | |
| 582-702, gnl|echTel1|scaffold_291956 (10357-10292) | |
| 582-702, gnl|echTel1|scaffold_310928 (41754-41844) | |
| 582-702, gnl|fr1|chrUn (260625370-260625450) | |
| 582-702, gnl|fr1|chrUn (260625368-260625456) | |
| 582-702, gnl|hg17|chr12 (52184746-52184834) | |
| 582-702, gnl|Hg17|chr12 (52184747-52184867) | |
| 582-702, gnl|hg17|chr8 (104741116-104741196) | |
| 582-702, gnl|loxAfr1|scaffold_1915 (21176-21256) | |
| 582-702, gnl|loxAfr1|scaffold_1915 (21174-21262) | |
| 582-702, gnl|mm7|chr15 (102508137-102508217) | |
| 582-702, gnl|mm7|chr15 (102508135-102508223) | |
| 582-702, gnl|Mm7|chr15 (102508136-102508256) | |
| 582-702, gnl|panTro1|chr10 (53429805-53429893) | |
| 582-702, gnl|panTro1|chr7 (107119935-107120015) | |
| 582-702, gnl|rheMac2|chr11 (50580175-50580263) | |
| 582-702, gnl|rheMac2|chr8 (106162916-106162996) | |
| 582-702, gnl|rn3|chr8 (128785336-128785417) | |
| 582-702, gnl|rn3|chr8 (128785336-128785423) | |
| 582-702, gnl|tetNig1|chr11 (2559924-2559844) | |
| 582-702, gnl|tetNig1|chr11 (2559926-2559838) | |
| 582-702, gnl|xenTro1|scaffold_280 (815731-815651) | |
| 582-702, gnl|xenTro1|scaffold_280 (808906-808819) | |
| 1031-1476, gnl|bosTau2|chr5 (18949668-18949241) | |
| 1031-1476, gnl|Hg17|chr12 (52186041-52186477) | |
| 1031-1476, gnl|Mm7|chr15 (102509341-102509757) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nco (0.323468) | |
| nlu (0.191681) | |
| eli (0.151814) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.323468) | |
| nlu (0.191681) | |
| eli (0.151814) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |