Ss1.1-Pig4-TMW8047F24.5
|
TTTGGTTGTTCCTTTTTTGATGGGGTGTAGGGGTGTAGTACTCAGCTTATGCCCTAAATA
ACTTGTATAAAAACCCCCAAAGTATTGTGTGGGTGTGTGGGTGTGAGTGTGTGTGTTTGT
TATATGTCTGGCAAATGAAACCTTTGTCTTCTGGAAATTAGTGAATTCCTCTCTCTCTCT
TTTTTTTTTTTTTCCCCTCCAGAAGTATTTGTTACAAGATTTGTAAATAAGAGCTCTACT
TAGTTTGTTTACCATGAACATGTTGCAGCAAAAACCTTCTTACACCTAATTCCTGCAAGA
TGGAAGGAAAGACTTTAAGACTTGCCAGGTTAAGCAGCAGCCAAGTTCTCAGTCATGGTT
TGCCTTGATTCATCTTTCAGACTTCGTTTCGCCATCTCTAAACTTCCCAGTCTTCCTTGA
TTTGAGTCCTTAATCTTTTAGGTTCTGAGCAGGAAGGGTAAAAGAGAAGAACCTGCCTAA
GTGTATTTAATTGTCCATGGGCTGAGACATCCCTTAATACTGCAGTGTTGCTGGATGTAC
GCGATCAGACACCAGAGGGTTGGGCATTCTTGCAATACCTTAAACAGTGCTGAGATCTGC
AGCATGGTACTAAGGAAGTTAAAGTTTGAATGTAACCACTTTATTTAAAAAGGTTTTTTT
CTTTTATTTAAATGAAATGGAGTTGAAGTGAACATGATTTTGTTGACCATGTTCGTGAAT
TATAGATGCAACATGCGTTGGTAGACTTGTGCGATGGTCTTTTGTGATACTTAATTTTAC
ATATCCCAGTCTCTGTATGTATCTGCATAGACAAAGAAAAAAAAGACCCGAACTCCTGCT
TTCTTTCATTGAAGGGTTTCCAGGACTGCGTGTCTGTTCCTGAGCTCTCTTTTAAGTACG
TGTATCCTTTGCTTGTATTTTGTATTAAAAAAATAAGAAAAAGAACCCTTTATTGTTGAG
CATGTTGGCATTGTCCCCTTTATTTTTTTCTCTTTTTGGGACATATGAAGCAAGTTATTC
TTTTTTCTGTATCTTTTTTTCTTTTGTAAACTTTTTCTGTTTTGTTTAAAAATGGCTTTA
TAAAAGGGCTTTTGTAACCCAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTGGTTGTTCCTTTTTTGATGGGGTGTAGGGGTGTAGTACTCAGCTTATGCCCTAAATA
ACTTGTATAAAAACCCCCAAAGTATTGTGTGGGTGTGTGGGTGTGAGTGTGTGTGTTTGT
TATATGTCTGGCAAATGAAACCTTTGTCTTCTGGAAATTAGTGAATTCCTCTCTCTCTCT
TTTTTTTTTTTTTCCCCTCCAGAAGTATTTGTTACAAGATTTGTAAATAAGAGCTCTACT
TAGTTTGTTTACCATGAACATGTTGCAGCAAAAACCTTCTTACACCTAATTCCTGCAAGA
TGGAAGGAAAGACTTTAAGACTTGCCAGGTTAAGCAGCAGCCAAGTTCTCAGTCATGGTT
TGCCTTGATTCATCTTTCAGACTTCGTTTCGCCATCTCTAAACTTCCCAGTCTTCCTTGA
TTTGAGTCCTTAATCTTTTAGGTTCTGAGCAGGAAGGGTAAAAGAGAAGAACCTGCCTAA
GTGTATTTAATTGTCCATGGGCTGAGACATCCCTTAATACTGCAGTGTTGCTGGATGTAC
GCGATCAGACACCAGAGGGTTGGGCATTCTTGCAATACCTTAAACAGTGCTGAGATCTGC
AGCATGGTACTAAGGAAGTTAAAGTTTGAATGTAACCACTTTATTTAAAAAGGTTTTTTT
CTTTTATTTAAATGAAATGGAGTTGAAGTGAACATGATTTTGTTGACCATGTTCGTGAAT
TATAGATGCAACATGCGTTGGTAGACTTGTGCGATGGTCTTTTGTGATACTTAATTTTAC
ATATCCCAGTCTCTGTATGTATCTGCATAGACAAAGAAAAAAAAGACCCGAACTCCTGCT
TTCTTTCATTGAAGGGTTTCCAGGACTGCGTGTCTGTTCCTGAGCTCTCTTTTAAGTACG
TGTATCCTTTGCTTGTATTTTGTATTAAAAAAATAAGAAAAAGAACCCTTTATTGTTGAG
CATGTTGGCATTGTCCCCTTTATTTTTTTCTCTTTTTGGGACATATGAAGCAAGTTATTC
TTTTTTCTGTATCTTTTTTTCTTTTGTAAACTTTTTCTGTTTTGTTTAAAAATGGCTTTA
TAAAAGGGCTTTTGTAACCCAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
728-842, + strand, RNAmicro p=0.948184 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
728-842, + strand, RNAmicro p=0.948184 |
|
1-389, gnl|bosTau2|chr16 (2976339-2975977) |
|
1-389, gnl|canFam2|chr38 (5155569-5156274) |
|
1-389, gnl|dasNov1|scaffold_4410 (38724-38062) |
|
1-389, gnl|echTel1|scaffold_106923 (129-828) |
|
1-389, gnl|galGal2|chr26 (856285-856971) |
|
1-389, gnl|hg17|chr1 (202414681-202415360) |
|
1-389, gnl|Hg17|chr1 (202415060-202414694) |
|
1-389, gnl|loxAfr1|scaffold_5895 (99595-100297) |
|
1-389, gnl|mm7|chr1 (131831097-131830427) |
|
1-389, gnl|Mm7|chr1 (131830744-131831083) |
|
1-389, gnl|monDom2|scaffold_13 (7558736-7559507) |
|
1-389, gnl|oryCun1|scaffold_199578 (39453-40122) |
|
1-389, gnl|panTro1|chr1 (185375161-185375836) |
|
1-389, gnl|rheMac2|chr1 (164701499-164700818) |
|
1-389, gnl|rn3|chr5 (44950760-44951452) |
| |
|
508-1101, gnl|bosTau2|chr16 (2975925-2975338) |
|
508-1101, gnl|Hg17|chr1 (202414690-202413978) |
|
508-1101, gnl|Mm7|chr1 (131831086-131831786) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-389, gnl|bosTau2|chr16 (2976339-2975977) |
|
1-389, gnl|canFam2|chr38 (5155569-5156274) |
|
1-389, gnl|dasNov1|scaffold_4410 (38724-38062) |
|
1-389, gnl|echTel1|scaffold_106923 (129-828) |
|
1-389, gnl|galGal2|chr26 (856285-856971) |
|
1-389, gnl|hg17|chr1 (202414681-202415360) |
|
1-389, gnl|Hg17|chr1 (202415060-202414694) |
|
1-389, gnl|loxAfr1|scaffold_5895 (99595-100297) |
|
1-389, gnl|mm7|chr1 (131831097-131830427) |
|
1-389, gnl|Mm7|chr1 (131830744-131831083) |
|
1-389, gnl|monDom2|scaffold_13 (7558736-7559507) |
|
1-389, gnl|oryCun1|scaffold_199578 (39453-40122) |
|
1-389, gnl|panTro1|chr1 (185375161-185375836) |
|
1-389, gnl|rheMac2|chr1 (164701499-164700818) |
|
1-389, gnl|rn3|chr5 (44950760-44951452) |
| |
|
508-1101, gnl|bosTau2|chr16 (2975925-2975338) |
|
508-1101, gnl|Hg17|chr1 (202414690-202413978) |
|
508-1101, gnl|Mm7|chr1 (131831086-131831786) |
|
spc (1.47376) |
|
liv (1.02399) |
|
vin (0.997672) |
|
fcc (0.988924) |
|
gul (0.887942) |
|
ova (0.774793) |
|
lun (0.752445) |
|
isp (0.75188) |
|
spl (0.715922) |
|
sug (0.636456) |
|
pro (0.512033) |
|
thg (0.507164) |
|
fco (0.471624) |
|
lin (0.436808) |
|
bla (0.373042) |
|
tra (0.369276) |
|
pgl (0.35545) |
|
fty (0.351679) |
|
rec (0.346141) |
|
ecc (0.345105) |
|
eye (0.341006) |
|
fat (0.294855) |
|
ski (0.29347) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
aor (0.195274) |
|
col (0.195008) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
cje (0.165235) |
|
csp (0.161186) |
|
csk (0.140746) |
|
pla (0.133672) |
|
ese (0.126502) |
|
eep (0.122564) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
spc (1.47376) |
|
liv (1.02399) |
|
vin (0.997672) |
|
fcc (0.988924) |
|
gul (0.887942) |
|
ova (0.774793) |
|
lun (0.752445) |
|
isp (0.75188) |
|
spl (0.715922) |
|
sug (0.636456) |
|
pro (0.512033) |
|
thg (0.507164) |
|
fco (0.471624) |
|
lin (0.436808) |
|
bla (0.373042) |
|
tra (0.369276) |
|
pgl (0.35545) |
|
fty (0.351679) |
|
rec (0.346141) |
|
ecc (0.345105) |
|
eye (0.341006) |
|
fat (0.294855) |
|
ski (0.29347) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
aor (0.195274) |
|
col (0.195008) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
cje (0.165235) |
|
csp (0.161186) |
|
csk (0.140746) |
|
pla (0.133672) |
|
ese (0.126502) |
|
eep (0.122564) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
