Ss1.1-Pig4-TMW8047G03.3
|
GGGTGTGGCTTTCTTTGTTGAAATGAATTTCTATGTATTGTTGCTGTTTGAAGTACAGCC
TCTCACAGTTATATCCTAAGCATGTCACTTTTCCCATTAAAGCACTAAGTTCTTTGAATG
TTTCATTGTCCCCTTAAGTATTTTATTCAAATGCATCAGAGAACATGATCCCCCGTAGCT
GTCACTTCTTAATCATCTTGTAGCATAGATGGTGTAACAGACACAGAGATGCACTCTTCA
TTTCTGAGCAGAGTTGTCCTGATGGTTTCCTGGTCTGTAGGGCACTGAGGATGGAATTTG
GGATCACTAAGTAGGCTTGCAATGAAGAGCGGTAAGACTGCAGCATAGTTTCAGTTTATT
CTCTTACATAATAGTTTTCGTGTTTATGAATTAGTTGGGGTGGTTATGTTTGCATGCTTA
TGCACACACTTGAACATTAATTATAGCTGTAATACAAATAACCTGATGTTTTTCCTTGGG
GATGATGGCCTTGCTATTTTTCTTAATTCCGATGCCTGAATTATATTTTAAAATTTTCTT
TCCACACCTCCCTTCAATTTTTCTGCTGCAGTATTTGAAAGAAATGTTCGGAGAAATGAT
TTTGATGGTGAGCACAGATCTACAACTGTACTAGTAATTAAAGATACATCATATGTTGTA
ACCTTGTTGGGAAAAAGCTACTCACTTTCTCCTTGGTAAAGCATCACCATAGCAAAATAA
TACTGACCTTAAGAATTTAAAATCTCTTAAGTCATTACTGACAAAAGACAGAAACACCAT
GATCTTTAATATCTGCAGTATTGTTTTTCCCATTGATTTAAAAAGTTCAGAATAAATACT
GTATATTAGAATTTGCTTGTAAAGTGAATTATAAAAACTGGATGTAAAGTCTCTTTCCTG
AAAATGTTGGCATAGTAAATAAAAATAAAGTTCATAATTATAAGTTTCAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGTGTGGCTTTCTTTGTTGAAATGAATTTCTATGTATTGTTGCTGTTTGAAGTACAGCC
TCTCACAGTTATATCCTAAGCATGTCACTTTTCCCATTAAAGCACTAAGTTCTTTGAATG
TTTCATTGTCCCCTTAAGTATTTTATTCAAATGCATCAGAGAACATGATCCCCCGTAGCT
GTCACTTCTTAATCATCTTGTAGCATAGATGGTGTAACAGACACAGAGATGCACTCTTCA
TTTCTGAGCAGAGTTGTCCTGATGGTTTCCTGGTCTGTAGGGCACTGAGGATGGAATTTG
GGATCACTAAGTAGGCTTGCAATGAAGAGCGGTAAGACTGCAGCATAGTTTCAGTTTATT
CTCTTACATAATAGTTTTCGTGTTTATGAATTAGTTGGGGTGGTTATGTTTGCATGCTTA
TGCACACACTTGAACATTAATTATAGCTGTAATACAAATAACCTGATGTTTTTCCTTGGG
GATGATGGCCTTGCTATTTTTCTTAATTCCGATGCCTGAATTATATTTTAAAATTTTCTT
TCCACACCTCCCTTCAATTTTTCTGCTGCAGTATTTGAAAGAAATGTTCGGAGAAATGAT
TTTGATGGTGAGCACAGATCTACAACTGTACTAGTAATTAAAGATACATCATATGTTGTA
ACCTTGTTGGGAAAAAGCTACTCACTTTCTCCTTGGTAAAGCATCACCATAGCAAAATAA
TACTGACCTTAAGAATTTAAAATCTCTTAAGTCATTACTGACAAAAGACAGAAACACCAT
GATCTTTAATATCTGCAGTATTGTTTTTCCCATTGATTTAAAAAGTTCAGAATAAATACT
GTATATTAGAATTTGCTTGTAAAGTGAATTATAAAAACTGGATGTAAAGTCTCTTTCCTG
AAAATGTTGGCATAGTAAATAAAAATAAAGTTCATAATTATAAGTTTCAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-943, gnl|bosTau2|chr28 (29861706-29862642) |
|
1-943, gnl|canFam2|chr4 (35941836-35942571) |
|
1-943, gnl|dasNov1|scaffold_8597 (39741-38962) |
|
1-943, gnl|echTel1|scaffold_261245 (4473-3750) |
|
1-943, gnl|galGal2|chr6 (524033-524956) |
|
1-943, gnl|hg17|chr10 (86267313-86268041) |
|
1-943, gnl|Hg17|chr10 (86267323-86268251) |
|
1-943, gnl|loxAfr1|scaffold_7711 (40446-39727) |
|
1-943, gnl|mm7|chr14 (34303376-34302704) |
|
1-943, gnl|Mm7|chr14 (34303365-34302494) |
|
1-943, gnl|monDom2|scaffold_41 (12438361-12439091) |
|
1-943, gnl|oryCun1|scaffold_206071 (149722-149013) |
|
1-943, gnl|panTro1|chr8_random (44910160-44910888) |
|
1-943, gnl|rheMac2|chr9 (52774117-52773382) |
|
1-943, gnl|rn3|chr16 (13052227-13051555) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-943, gnl|bosTau2|chr28 (29861706-29862642) |
|
1-943, gnl|canFam2|chr4 (35941836-35942571) |
|
1-943, gnl|dasNov1|scaffold_8597 (39741-38962) |
|
1-943, gnl|echTel1|scaffold_261245 (4473-3750) |
|
1-943, gnl|galGal2|chr6 (524033-524956) |
|
1-943, gnl|hg17|chr10 (86267313-86268041) |
|
1-943, gnl|Hg17|chr10 (86267323-86268251) |
|
1-943, gnl|loxAfr1|scaffold_7711 (40446-39727) |
|
1-943, gnl|mm7|chr14 (34303376-34302704) |
|
1-943, gnl|Mm7|chr14 (34303365-34302494) |
|
1-943, gnl|monDom2|scaffold_41 (12438361-12439091) |
|
1-943, gnl|oryCun1|scaffold_206071 (149722-149013) |
|
1-943, gnl|panTro1|chr8_random (44910160-44910888) |
|
1-943, gnl|rheMac2|chr9 (52774117-52773382) |
|
1-943, gnl|rn3|chr16 (13052227-13051555) |
|
bfe (0.449573) |
|
vin (0.332557) |
|
isp (0.300752) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
mga (0.160205) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ret (0.128733) |
|
bla (0.124347) |
|
ldo (0.0970026) |
|
bfe (0.449573) |
|
vin (0.332557) |
|
isp (0.300752) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
mga (0.160205) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ret (0.128733) |
|
bla (0.124347) |
|
ldo (0.0970026) |