Non-Coding RNA Search

Ss1.1-Pig4-TMW8047G04.3

Sequence:


               
               GCTGTGTTGTAATTGATTTGTGCTGTCAGGATGATGGAAGAAACCTTGAAGTTTACCAAC
TGCAGAATCTTAGGAAAGCTGGGAAAGGGCTTGATCAGGCCTATAATTCAGTAGCCAGAT
CTTTCCCTCGAAGGTTTGTTTTGCCCTTACACGTCAGTTTGAATGCCCCTGAGGGGGAGA
ACCTCAGCCCGTTGTCCTATTCTTCAGCTAGTGCTGTGAAACAGGCTGATGGAAAGATTT
GGTGTTCTTATGAAAATCTACACCCAAAGGACCTGGAAGAGGAAGGAGGTGTTGAATTTC
CCCAGATTAACTATGGCCAATTCAGTGGCAAAAAATATTGTTTCTTCTATGGTTGCGGCT
TTCGGCATTTGGTGGGGGATTCTCTGATCAAGGTGGATGTAGTGAACAAGACACTGACGG
TTTGGAGAGAAGACAGCTTTTATCCCTCAGAACCTATTTTTGTTCCAGTTCCAGGAACTA
ATGAAGAAGATGGTGGGGTTATTCTTTCTGTGGTGATCACCCCCAACCAGAATGAAAGAA
ATTTTCTCCTGGTCTTGGATGCCAAGAACTTTGAAGAACTGGGCCGAGCGGAGGTGCCTG
TGCAAATGCCTTATGGGTTCCATGGCACCTTCGTGACCATCTGATGGAACAACCATGAGG
TCTGAAAACTAGGTTTGAAATGAATGTGCTCTGTAGAAAACAGAGAGCACAAGTGCACCT
TACCTTCCAATCTTAGACATCTGGCTTTAAAATTTCTATTAAAAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGTTGTAATTGATTTGTGCTGTCAGGATGATGGAAGAAACCTTGAAGTTTACCAAC
TGCAGAATCTTAGGAAAGCTGGGAAAGGGCTTGATCAGGCCTATAATTCAGTAGCCAGAT
CTTTCCCTCGAAGGTTTGTTTTGCCCTTACACGTCAGTTTGAATGCCCCTGAGGGGGAGA
ACCTCAGCCCGTTGTCCTATTCTTCAGCTAGTGCTGTGAAACAGGCTGATGGAAAGATTT
GGTGTTCTTATGAAAATCTACACCCAAAGGACCTGGAAGAGGAAGGAGGTGTTGAATTTC
CCCAGATTAACTATGGCCAATTCAGTGGCAAAAAATATTGTTTCTTCTATGGTTGCGGCT
TTCGGCATTTGGTGGGGGATTCTCTGATCAAGGTGGATGTAGTGAACAAGACACTGACGG
TTTGGAGAGAAGACAGCTTTTATCCCTCAGAACCTATTTTTGTTCCAGTTCCAGGAACTA
ATGAAGAAGATGGTGGGGTTATTCTTTCTGTGGTGATCACCCCCAACCAGAATGAAAGAA
ATTTTCTCCTGGTCTTGGATGCCAAGAACTTTGAAGAACTGGGCCGAGCGGAGGTGCCTG
TGCAAATGCCTTATGGGTTCCATGGCACCTTCGTGACCATCTGATGGAACAACCATGAGG
TCTGAAAACTAGGTTTGAAATGAATGTGCTCTGTAGAAAACAGAGAGCACAAGTGCACCT
TACCTTCCAATCTTAGACATCTGGCTTTAAAATTTCTATTAAAAATGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865033|ref|XP_591937.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865033|ref|XP_591937.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               235-421, gnl|bosTau2|chr15 (8006540-8006726)
               

               
               235-421, gnl|Hg17|chr11 (111590693-111590879)
               

               
               235-421, gnl|Mm7|chr9 (50514244-50514058)
               


               
               529-766, gnl|bosTau2|chr15 (8008850-8009087)
               

               
               529-766, gnl|Hg17|chr11 (111593653-111594168)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               235-421, gnl|bosTau2|chr15 (8006540-8006726)
               

               
               235-421, gnl|Hg17|chr11 (111590693-111590879)
               

               
               235-421, gnl|Mm7|chr9 (50514244-50514058)
               


               
               529-766, gnl|bosTau2|chr15 (8008850-8009087)
               

               
               529-766, gnl|Hg17|chr11 (111593653-111594168)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.172801)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               jej (0.0989218)

	235-421, gnl\|bosTau2\|chr15 (8006540-8006726)
	235-421, gnl\|Hg17\|chr11 (111590693-111590879)
	235-421, gnl\|Mm7\|chr9 (50514244-50514058)

	529-766, gnl\|bosTau2\|chr15 (8008850-8009087)
	529-766, gnl\|Hg17\|chr11 (111593653-111594168)