Non-Coding RNA Search

Ss1.1-Pig4-TMW8047G06.3

Sequence:


               
               CGTCGCGGACCCCGCAGGCAGCGAGGCCGGGCGGGCGGGCTGCGGCGCCCTGCGCCCCTC
GCCAGGGTCGCCATGCAGGGCCCTGCCGGGAACACGAGCCGCGCACTGCCAGGCGGGCCG
CCCTCCACCGTCGCGTCCGGGGCGGGCCGCTGCGAGAGCGGCGCACTCATGCACAGTTTC
GGCATTTTCCTGCAGGGGCTGCTCGGCGTCGTGGCCTTCAGCACGTTGTTGCTCAAACGC
TTCAGAGAACCAAAGCATGAAAGACGTCCGTGGAGGATATGGTTTTTAGACACTTCCAAA
CAAGCCATAGGAATGCTATTCATCCACTTCGCAAATGTATACCTAGCAGATCTCACTGAA
GAGGACCCTTGCTCATTGTACCTCATCAACTTCCTCCTGGACGCCACTGTGGGCATGTTG
CTCATATACGTGGGTGTGCGTGCTGTTAGCGTCCTGGTGGAGTGGCAGCAGTGGGAGTCC
CTACGTTTTGGCGAATATGGAGACCCTCTGCAGTGCGGAGCCTGGGTCGGCCAGTGTGCC
CTTTACATTGTGATCATGATTTTTGAAAAATCTGTCGTCTTCATCGTCCTCCTAATACTT
CAGTGGAAGAAGGTTGCCCTGTTGAATCCCATTGAGAACCCAGACCTGAAGCTGGCCATC
GTCATGCTGATCGTCCCCTTCTTTGTCAATGCTCTGATGTTTTGGGTAGTGGACAACTTC
CTCATGAGAAAGGGGAGGACGAAAGCTAAACTAGAAGAAAGGGGAGCCAACCAGGACTCA
AGGAATGGGAGCAAGGTCCGTTACCGAAGGGCCGCATCCCATGAGGAGTCGGAGTCTGAG
ATCCTGATCTCAGCTGATGATGAGATGGAGGAGTCTGATGTGGAGGAGGACCTTCGGAGA
CTGACCCCCCTGAAGCCCGCAAAGAAAAAGAAGCACCGCTTCGGGCTACCTGTATGACAC
ATTCCCGAGCTGGGGTCAGGTTGGGGGTGAGTTGCCAGGTCAGCCGAGGGTCGCTCCACT
GCGTCGTCCCTCCCCTCCTCTCTGCCCCTTTTCTACCTCCACTCTTCCCATGGCCTATGC
CTGTTCCTGGACAACTGTGACTCAAGGGAAGGAGGCCATTGCCCCGGCCATGGCAGCTGG
AGGTCCTCACGCAGTTGCACTACAAACACTGACCAAATATGCAAGCGAGGCGTTTTGTTT
GTTGTCGTCCTGAGTGGTGTTGTGAGGGACCCCGAAGCCCTGTCCTGCGTCTGTCCAGGT
GGCCTCAAGGACGAGAACTCACATGCACACAGATCAAGCCTCAGGGGAACATGAAGATGT
AACACATTTGGAGCAAAGGGTTACTCATTGACCAAGTTGGAACCGGATGCTTTCTTACTC
GAAATGGCTTTTGTAACTATTGATTTCTATAGCCGGTTTTAAGAGCTGTCACAGTGTTAA
TGTTTTTTGAGTATGTGTTCATTTCCTATGGGACTAATGGGCAAAACATAGATTTTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCGCGGACCCCGCAGGCAGCGAGGCCGGGCGGGCGGGCTGCGGCGCCCTGCGCCCCTC
GCCAGGGTCGCCATGCAGGGCCCTGCCGGGAACACGAGCCGCGCACTGCCAGGCGGGCCG
CCCTCCACCGTCGCGTCCGGGGCGGGCCGCTGCGAGAGCGGCGCACTCATGCACAGTTTC
GGCATTTTCCTGCAGGGGCTGCTCGGCGTCGTGGCCTTCAGCACGTTGTTGCTCAAACGC
TTCAGAGAACCAAAGCATGAAAGACGTCCGTGGAGGATATGGTTTTTAGACACTTCCAAA
CAAGCCATAGGAATGCTATTCATCCACTTCGCAAATGTATACCTAGCAGATCTCACTGAA
GAGGACCCTTGCTCATTGTACCTCATCAACTTCCTCCTGGACGCCACTGTGGGCATGTTG
CTCATATACGTGGGTGTGCGTGCTGTTAGCGTCCTGGTGGAGTGGCAGCAGTGGGAGTCC
CTACGTTTTGGCGAATATGGAGACCCTCTGCAGTGCGGAGCCTGGGTCGGCCAGTGTGCC
CTTTACATTGTGATCATGATTTTTGAAAAATCTGTCGTCTTCATCGTCCTCCTAATACTT
CAGTGGAAGAAGGTTGCCCTGTTGAATCCCATTGAGAACCCAGACCTGAAGCTGGCCATC
GTCATGCTGATCGTCCCCTTCTTTGTCAATGCTCTGATGTTTTGGGTAGTGGACAACTTC
CTCATGAGAAAGGGGAGGACGAAAGCTAAACTAGAAGAAAGGGGAGCCAACCAGGACTCA
AGGAATGGGAGCAAGGTCCGTTACCGAAGGGCCGCATCCCATGAGGAGTCGGAGTCTGAG
ATCCTGATCTCAGCTGATGATGAGATGGAGGAGTCTGATGTGGAGGAGGACCTTCGGAGA
CTGACCCCCCTGAAGCCCGCAAAGAAAAAGAAGCACCGCTTCGGGCTACCTGTATGACAC
ATTCCCGAGCTGGGGTCAGGTTGGGGGTGAGTTGCCAGGTCAGCCGAGGGTCGCTCCACT
GCGTCGTCCCTCCCCTCCTCTCTGCCCCTTTTCTACCTCCACTCTTCCCATGGCCTATGC
CTGTTCCTGGACAACTGTGACTCAAGGGAAGGAGGCCATTGCCCCGGCCATGGCAGCTGG
AGGTCCTCACGCAGTTGCACTACAAACACTGACCAAATATGCAAGCGAGGCGTTTTGTTT
GTTGTCGTCCTGAGTGGTGTTGTGAGGGACCCCGAAGCCCTGTCCTGCGTCTGTCCAGGT
GGCCTCAAGGACGAGAACTCACATGCACACAGATCAAGCCTCAGGGGAACATGAAGATGT
AACACATTTGGAGCAAAGGGTTACTCATTGACCAAGTTGGAACCGGATGCTTTCTTACTC
GAAATGGCTTTTGTAACTATTGATTTCTATAGCCGGTTTTAAGAGCTGTCACAGTGTTAA
TGTTTTTTGAGTATGTGTTCATTTCCTATGGGACTAATGGGCAAAACATAGATTTTTAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q86TL2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q86TL2_HUMAN

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-232, gnl|bosTau2|chr22 (37164647-37164415)
               

               
               4-232, gnl|Hg17|chr3 (52906573-52906347)
               

               
               4-232, gnl|Mm7|chr14 (28255280-28255495)
               


               
               499-624, gnl|bosTau2|chr22 (42287587-42287712)
               

               
               499-624, gnl|Hg17|chr3 (52853998-52853874)
               

               
               499-624, gnl|Mm7|chr14 (28300448-28300572)
               


               
               836-1500, gnl|bosTau2|chr22 (42291932-42292622)
               

               
               836-1500, gnl|Hg17|chr3 (52849672-52848947)
               

               
               836-1500, gnl|Mm7|chr14 (28304071-28304741)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-232, gnl|bosTau2|chr22 (37164647-37164415)
               

               
               4-232, gnl|Hg17|chr3 (52906573-52906347)
               

               
               4-232, gnl|Mm7|chr14 (28255280-28255495)
               


               
               499-624, gnl|bosTau2|chr22 (42287587-42287712)
               

               
               499-624, gnl|Hg17|chr3 (52853998-52853874)
               

               
               499-624, gnl|Mm7|chr14 (28300448-28300572)
               


               
               836-1500, gnl|bosTau2|chr22 (42291932-42292622)
               

               
               836-1500, gnl|Hg17|chr3 (52849672-52848947)
               

               
               836-1500, gnl|Mm7|chr14 (28304071-28304741)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	4-232, gnl\|bosTau2\|chr22 (37164647-37164415)
	4-232, gnl\|Hg17\|chr3 (52906573-52906347)
	4-232, gnl\|Mm7\|chr14 (28255280-28255495)

	499-624, gnl\|bosTau2\|chr22 (42287587-42287712)
	499-624, gnl\|Hg17\|chr3 (52853998-52853874)
	499-624, gnl\|Mm7\|chr14 (28300448-28300572)

	836-1500, gnl\|bosTau2\|chr22 (42291932-42292622)
	836-1500, gnl\|Hg17\|chr3 (52849672-52848947)
	836-1500, gnl\|Mm7\|chr14 (28304071-28304741)