Non-Coding RNA Search

Ss1.1-Pig4-TMW8047G11.3

Sequence:


               
               AGTCCACTGTGCTTGTGGTGGGGGGAGAGGAAAACAGACTGGTCGCCAATACTGTGATTT
CCCCTGGAACGTGGACCCATCTGTGCAGCACCTGGAATTCTGAACAAGGGCATGTAGCCT
TGTGGGTCAACGGTGACCTGATAGCCACCAAGGTCGACATGGCCACGGGTCACATTGTTC
CAGAAGGAGGAATCCTGCAGATTGGCCAAGAAAAGAATGGATGCTGTGTGGGTGGTGGCT
TTGATGAAATATTAGCCTTTTCTGGAAGACTCACAGGCTTCAATATCTGGGATCGTGTTC
TCAGCACCGAAGAGATAAAAAAGACTGGAGGAGCAGAGTCCTGTCACATCCGGGGGAATG
TGGTTGGGTGGGGAGTCACAGAGATTCAGCCCCATGGAGGAGCTCAATACGTTTCTTAAG
TGTTGTGAAACTCTACTCGGAGCCAAAGAAAGAAACTCACATTTTAAACATTTGGGAAGG
TCTAAAAACTTTGATGCATATTAAGAACACTTGAGACTAATGAAGGAGAGAGTTGAGATC
AATCTTTATTTATCTTGGCAAAATACTGGGCAAAGAGTGGAAGGGGAGACATTGGAGAAG
GCTTTGGGGTATACTGTTACTAGACTTTATGCCATGGTGCTTTCAGATTAATGCTGTGTC
TTTGTCAGATAAATTCTCAAATAATTAAAAAGGACTGTGTGGTTGAACAGAAGGATAATT
GTTTCACTTCTCTTTGGTTAATTTTGTTTTGGCCAGGGATGAATTTTACATTGAAAGAAT
AATAAAATAACACATGTTGTTCATTGCTCATTGTCATTGGTATATACCTTATTACAAAAA
AATGATGATAAAACATATTTATGCTACAAAGTGACTTAACAAATACAAATGTAGTTTATG
TGTTATAATCAAATGTCACTTGTTGGAGAGGATAGTTATATAAGTTATACTGTAAAATGG
TTTTGTATTAATTTTATTAAGACTATTTTTATAAAGCTCTACTATAAATAAAATATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCACTGTGCTTGTGGTGGGGGGAGAGGAAAACAGACTGGTCGCCAATACTGTGATTT
CCCCTGGAACGTGGACCCATCTGTGCAGCACCTGGAATTCTGAACAAGGGCATGTAGCCT
TGTGGGTCAACGGTGACCTGATAGCCACCAAGGTCGACATGGCCACGGGTCACATTGTTC
CAGAAGGAGGAATCCTGCAGATTGGCCAAGAAAAGAATGGATGCTGTGTGGGTGGTGGCT
TTGATGAAATATTAGCCTTTTCTGGAAGACTCACAGGCTTCAATATCTGGGATCGTGTTC
TCAGCACCGAAGAGATAAAAAAGACTGGAGGAGCAGAGTCCTGTCACATCCGGGGGAATG
TGGTTGGGTGGGGAGTCACAGAGATTCAGCCCCATGGAGGAGCTCAATACGTTTCTTAAG
TGTTGTGAAACTCTACTCGGAGCCAAAGAAAGAAACTCACATTTTAAACATTTGGGAAGG
TCTAAAAACTTTGATGCATATTAAGAACACTTGAGACTAATGAAGGAGAGAGTTGAGATC
AATCTTTATTTATCTTGGCAAAATACTGGGCAAAGAGTGGAAGGGGAGACATTGGAGAAG
GCTTTGGGGTATACTGTTACTAGACTTTATGCCATGGTGCTTTCAGATTAATGCTGTGTC
TTTGTCAGATAAATTCTCAAATAATTAAAAAGGACTGTGTGGTTGAACAGAAGGATAATT
GTTTCACTTCTCTTTGGTTAATTTTGTTTTGGCCAGGGATGAATTTTACATTGAAAGAAT
AATAAAATAACACATGTTGTTCATTGCTCATTGTCATTGGTATATACCTTATTACAAAAA
AATGATGATAAAACATATTTATGCTACAAAGTGACTTAACAAATACAAATGTAGTTTATG
TGTTATAATCAAATGTCACTTGTTGGAGAGGATAGTTATATAAGTTATACTGTAAAATGG
TTTTGTATTAATTTTATTAAGACTATTTTTATAAAGCTCTACTATAAATAAAATATTTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-1020, gnl|bosTau2|chr1 (69958404-69959416)
               

               
               2-1020, gnl|Hg17|chr3 (158643053-158644071)
               

               
               2-1020, gnl|Mm7|chr3 (66325880-66326890)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1020, gnl|bosTau2|chr1 (69958404-69959416)
               

               
               2-1020, gnl|Hg17|chr3 (158643053-158644071)
               

               
               2-1020, gnl|Mm7|chr3 (66325880-66326890)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	2-1020, gnl\|bosTau2\|chr1 (69958404-69959416)
	2-1020, gnl\|Hg17\|chr3 (158643053-158644071)
	2-1020, gnl\|Mm7\|chr3 (66325880-66326890)