Non-Coding RNA Search

Ss1.1-Pig4-TMW8047G16.5

Sequence:


               
               GTCAACAACCATCGAGTTTGTCACCCAGCGGAACTGTAACCTGACACAGATTGGCGGCCT
CATAGACTCCAAAGGTTATGGCGTCGGCACCCCCATGGGTTCTCCGTATAGAGATAAAAT
CACCATCGCAATTCTTCAACTGCAAGAGGAAGGCAAGCTGCACATGATGAAGGAGAAGTG
GTGGAGGGGCAATGGGTGTCCAGAGGAGGAGAGCAAAGAGGCCAGTGCCCTGGGGGTTCA
AAATATTGGTGGCATCTTCATTGTTCTGGCAGCCGGCTTGGTGCTCTCAGTTTTTGTGGC
AGTGGGAGAGTTTTTATACAAATCCAAAAAAAACGCTCAATTGGAAAAGAGAACCAAGAC
TAAGTTCCCTCGAGACTATGTATTCCTCCCTTTTTTGGAGTCAGATCATTCCATTGCTAC
AGTGTTGTCATCATCACCATCTTCATCATCATTATCATCATGTTCTTAATAAGTACATCT
AATAAGGTCCTTCTGTAGTGCCATGGTAGAAGAACTGAGGATGTCCCTGAAGTGCCAGCG
TCGGTTAAAACACAAGCCACAGGCCCCAGTTATTGTGAAAACAGAAGAAGTTATCAACAT
GCACACATTTAACGACAGAAGGTTGCCAGGTAAAGAAACCATGGCATAAAGCTGGGAGGC
CAAACACCCAAGCACAAACTGTCGTCTTTTTTCCAAACAATTTAGCGAGAATGTTTCCTG
TGGAAATATGCAACCTGTGCAAAATAAAATGAGTTACCTCATGCCGCTGTGTCTATGAAC
TAGAGACTCTGTGATCTAAGCAGTTGCAATGATCAGACTTGATTTACAAGCATCATGGAT
CAACCAAGTTACACGGGGTTACACTGTTTATCATGGGTTCCTCCCTTCTTCTGAGTGAAT
GTTACATACGCATTTTGTGGCTGGTTTCAAATGCAGTCCAGTGAGAAATTACAGGTTCCT
TTTGAAGTCCAACTGTTGCCAGGAGATGGAATATCAATGCCCCAAGGGTGACCAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAACAACCATCGAGTTTGTCACCCAGCGGAACTGTAACCTGACACAGATTGGCGGCCT
CATAGACTCCAAAGGTTATGGCGTCGGCACCCCCATGGGTTCTCCGTATAGAGATAAAAT
CACCATCGCAATTCTTCAACTGCAAGAGGAAGGCAAGCTGCACATGATGAAGGAGAAGTG
GTGGAGGGGCAATGGGTGTCCAGAGGAGGAGAGCAAAGAGGCCAGTGCCCTGGGGGTTCA
AAATATTGGTGGCATCTTCATTGTTCTGGCAGCCGGCTTGGTGCTCTCAGTTTTTGTGGC
AGTGGGAGAGTTTTTATACAAATCCAAAAAAAACGCTCAATTGGAAAAGAGAACCAAGAC
TAAGTTCCCTCGAGACTATGTATTCCTCCCTTTTTTGGAGTCAGATCATTCCATTGCTAC
AGTGTTGTCATCATCACCATCTTCATCATCATTATCATCATGTTCTTAATAAGTACATCT
AATAAGGTCCTTCTGTAGTGCCATGGTAGAAGAACTGAGGATGTCCCTGAAGTGCCAGCG
TCGGTTAAAACACAAGCCACAGGCCCCAGTTATTGTGAAAACAGAAGAAGTTATCAACAT
GCACACATTTAACGACAGAAGGTTGCCAGGTAAAGAAACCATGGCATAAAGCTGGGAGGC
CAAACACCCAAGCACAAACTGTCGTCTTTTTTCCAAACAATTTAGCGAGAATGTTTCCTG
TGGAAATATGCAACCTGTGCAAAATAAAATGAGTTACCTCATGCCGCTGTGTCTATGAAC
TAGAGACTCTGTGATCTAAGCAGTTGCAATGATCAGACTTGATTTACAAGCATCATGGAT
CAACCAAGTTACACGGGGTTACACTGTTTATCATGGGTTCCTCCCTTCTTCTGAGTGAAT
GTTACATACGCATTTTGTGGCTGGTTTCAAATGCAGTCCAGTGAGAAATTACAGGTTCCT
TTTGAAGTCCAACTGTTGCCAGGAGATGGAATATCAATGCCCCAAGGGTGACCAATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12539600|emb|CAC25104.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12539600|emb|CAC25104.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               98-716, + strand, RNAz p=0.995671

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-716, + strand, RNAz p=0.995671

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               98-349, gnl|bosTau2|chr3 (30651330-30651581)
               

               
               98-349, gnl|Hg17|chr6 (102609897-102610148)
               

               
               98-349, gnl|Mm7|chr10 (48925436-48925185)
               


               
               485-1014, gnl|bosTau2|chr3 (30666907-30667437)
               

               
               485-1014, gnl|Hg17|chr6 (102622915-102623445)
               

               
               485-1014, gnl|Mm7|chr10 (48913087-48912549)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-349, gnl|bosTau2|chr3 (30651330-30651581)
               

               
               98-349, gnl|Hg17|chr6 (102609897-102610148)
               

               
               98-349, gnl|Mm7|chr10 (48925436-48925185)
               


               
               485-1014, gnl|bosTau2|chr3 (30666907-30667437)
               

               
               485-1014, gnl|Hg17|chr6 (102622915-102623445)
               

               
               485-1014, gnl|Mm7|chr10 (48913087-48912549)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	98-349, gnl\|bosTau2\|chr3 (30651330-30651581)
	98-349, gnl\|Hg17\|chr6 (102609897-102610148)
	98-349, gnl\|Mm7\|chr10 (48925436-48925185)

	485-1014, gnl\|bosTau2\|chr3 (30666907-30667437)
	485-1014, gnl\|Hg17\|chr6 (102622915-102623445)
	485-1014, gnl\|Mm7\|chr10 (48913087-48912549)