Ss1.1-Pig4-TMW8047G20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATGGCCAATTGTGAAAGTGAACTCTGCTCTTTATGGTAGGTAGAGATGACATTACAGT GCTGATTACATTGTGCAAAGCAGCCTTTTGCGTTTTAGTGTATTCCTAAGTCTCCTGTGT TCTTGTGTATGTGTGGAAAGGGGGCAGTATGGAAAGTATGCACTACAGTGTTTTGAGAAT TTATTAATGTGTTTTTTCTTCTTTTAGAGTTATGTGTTAGAGAAGTAGTAAGGTCAAAGT TAGTAGTGGTGAACAAATTAATTGTGTTTATTCGTTTATATGCCTGTTAAGCCATTGCCA CAATTAATATAAACTTTTCATCACCCCCAAATAATTCCTGTTCCCCTTGGTAATATCTCC CTTGCTTCTTTCCTGTCCTCCTCCCCCATCCTCTGGTAATAAGTGATCTGCTTTCTGTCA CTATGGATTACTTTATATGAAGGTGGATTTTAAATTGAAAAATCTGGAGCAGTATAATAA ACTTGATCAGGATCTTAATGAAGTCAAAGCTCGAGTAGAAGAACTGGACAGAAAATACTA TGAAGTAAAAAATAAGAAAGATGAATTACAAAGTGAAAGAAATTACTTGTGGCGAGAGGA GAATGCAGAACAGCAAGCACTTGCTGCTAAAAGAGAAGATCTAGAAAAGAAACAGCAACT TCTTAGAGCGGCAACAGGAAAGGCAAAAAGACCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATGGCCAATTGTGAAAGTGAACTCTGCTCTTTATGGTAGGTAGAGATGACATTACAGT GCTGATTACATTGTGCAAAGCAGCCTTTTGCGTTTTAGTGTATTCCTAAGTCTCCTGTGT TCTTGTGTATGTGTGGAAAGGGGGCAGTATGGAAAGTATGCACTACAGTGTTTTGAGAAT TTATTAATGTGTTTTTTCTTCTTTTAGAGTTATGTGTTAGAGAAGTAGTAAGGTCAAAGT TAGTAGTGGTGAACAAATTAATTGTGTTTATTCGTTTATATGCCTGTTAAGCCATTGCCA CAATTAATATAAACTTTTCATCACCCCCAAATAATTCCTGTTCCCCTTGGTAATATCTCC CTTGCTTCTTTCCTGTCCTCCTCCCCCATCCTCTGGTAATAAGTGATCTGCTTTCTGTCA CTATGGATTACTTTATATGAAGGTGGATTTTAAATTGAAAAATCTGGAGCAGTATAATAA ACTTGATCAGGATCTTAATGAAGTCAAAGCTCGAGTAGAAGAACTGGACAGAAAATACTA TGAAGTAAAAAATAAGAAAGATGAATTACAAAGTGAAAGAAATTACTTGTGGCGAGAGGA GAATGCAGAACAGCAAGCACTTGCTGCTAAAAGAGAAGATCTAGAAAAGAAACAGCAACT TCTTAGAGCGGCAACAGGAAAGGCAAAAAGACCAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 583-683, - strand, RNAz p=0.799463 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 583-683, - strand, RNAz p=0.799463 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 116-582, gnl|bosTau2|chr26 (19147152-19146691) | |
| 116-582, gnl|Hg17|chr10 (112338623-112339456) | |
| 583-683, gnl|bosTau2|chr26 (19146527-19146427) | |
| 583-683, gnl|canFam2|chr28 (24913182-24913285) | |
| 583-683, gnl|danRer3|chr22 (41022624-41022727) | |
| 583-683, gnl|dasNov1|scaffold_72877 (7301-7198) | |
| 583-683, gnl|echTel1|scaffold_253498 (12871-12974) | |
| 583-683, gnl|fr1|chrUn (226444275-226444179) | |
| 583-683, gnl|galGal2|chr6 (25066963-25067066) | |
| 583-683, gnl|hg17|chr10 (112339639-112339742) | |
| 583-683, gnl|Hg17|chr10 (112339640-112339740) | |
| 583-683, gnl|loxAfr1|scaffold_64243 (7334-7231) | |
| 583-683, gnl|mm7|chr19 (53527734-53527837) | |
| 583-683, gnl|Mm7|chr19 (53527735-53527835) | |
| 583-683, gnl|monDom2|scaffold_14 (52608648-52608545) | |
| 583-683, gnl|oryCun1|scaffold_88908 (3906-3803) | |
| 583-683, gnl|panTro1|chr8 (114258458-114258561) | |
| 583-683, gnl|rheMac2|chr9 (110291751-110291854) | |
| 583-683, gnl|rn3|chr1 (260061830-260061933) | |
| 583-683, gnl|tetNig1|chr18 (2393541-2393644) | |
| 583-683, gnl|xenTro1|scaffold_510 (199465-199362) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-582, gnl|bosTau2|chr26 (19147152-19146691) | |
| 116-582, gnl|Hg17|chr10 (112338623-112339456) | |
| 583-683, gnl|bosTau2|chr26 (19146527-19146427) | |
| 583-683, gnl|canFam2|chr28 (24913182-24913285) | |
| 583-683, gnl|danRer3|chr22 (41022624-41022727) | |
| 583-683, gnl|dasNov1|scaffold_72877 (7301-7198) | |
| 583-683, gnl|echTel1|scaffold_253498 (12871-12974) | |
| 583-683, gnl|fr1|chrUn (226444275-226444179) | |
| 583-683, gnl|galGal2|chr6 (25066963-25067066) | |
| 583-683, gnl|hg17|chr10 (112339639-112339742) | |
| 583-683, gnl|Hg17|chr10 (112339640-112339740) | |
| 583-683, gnl|loxAfr1|scaffold_64243 (7334-7231) | |
| 583-683, gnl|mm7|chr19 (53527734-53527837) | |
| 583-683, gnl|Mm7|chr19 (53527735-53527835) | |
| 583-683, gnl|monDom2|scaffold_14 (52608648-52608545) | |
| 583-683, gnl|oryCun1|scaffold_88908 (3906-3803) | |
| 583-683, gnl|panTro1|chr8 (114258458-114258561) | |
| 583-683, gnl|rheMac2|chr9 (110291751-110291854) | |
| 583-683, gnl|rn3|chr1 (260061830-260061933) | |
| 583-683, gnl|tetNig1|chr18 (2393541-2393644) | |
| 583-683, gnl|xenTro1|scaffold_510 (199465-199362) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| bla (0.124347) |