Non-Coding RNA Search

Ss1.1-Pig4-TMW8047H07.5.5

Sequence:


               
               AAAGCATATAAAAATATGCAGTGCCTACACAGGAAATCCCCAATTTTAAATAGCTATGTT
CTAAGATTGCAAATTGGATTGTTCCAAAATCAGACTACATCTCCTCATATAAATAATATT
TTTGTGAATAATAGAGGTAACAGTTTAGCTAGTGCTCTCCTGGTTTGGAATAAATTGTTA
GTGACTATAGATAGCCCTTTTACCTCTCTTAAAAACAAACACATTGCTGTTAGCACAGGT
TACTATCAATTAGTAGAACATTAAGTTTAAAAGTGGAAATAATTTAATTAGTCTTAGCAA
AACTATTTTGAGACAAGAGCTATCACTTAAGTTACCTAACTTGGGAATCTGCTTCTCTTG
CTAAAACCATATGATGTCTGAAGGTGCTGTATATTTTCAGTGACCTTGAGGAAAGGAGCT
GGTCATTTCTTTTTATGGGTCATATGCCGTCAGGGCTTTGCTGATGCCATGCTTTTCAGT
TCAAGAGCTGTGTCCGGAACATCCTAGATATCCATCACCCATACTGTTCTTCTAAGACCA
TCTGTGTTGCAGGCTCAGTCTCTCTCCCTTAGGCAGGCCTCTCCTCCAGCTTTGCTCCTT
GGTACTAAATTTACAGGTGAGCACTATTCATTCTTGTTAAAAAAAAAAAAAAAATTCCTC
GTTTTACTGTTATCAACAATGACCATAACTTTCTCCTTTTTTTCAAGAGATATAAAGGTA
GAGATGGTATTCCTTTTTCATTAAAAAAAAAAAAACTATAATTTTTAAACAACTGGCACT
TAGCAATTTAGTTTTCAGACCCTTTTCTGAATTAAATTGATGAGGTGATTCTAAAATTGA
TTCTAAAGTTTTAATCTTGCTTTATCATATAAACATCTAGTTAGAAACTGTTTATGCTAA
TAAAGACTTGTATTTTGTGGCATTCGTTCTTCATGTTCCTTTTTTATGTATTTAAAATTG
TTCATTCATTTCCAAATGAGTGGAAAAGTGACTGTTGTTGAGATATGTATAGGGCAAGTG
CACTTGATTAGAGCATGAACTGTATTTTCACATTAGCTGGATGTGCTTTGCACTCTGCTC
TTGTAGATTTATTTTGTTTACAGTAGACTGATGTCAGTTTTTGTAAATGTTTTTACTTAG
CACTTTAACTGTGAGTGTACAAACTGATTTTAAATGTAGTGGTTGTATATTTTGGTTATA
AATTGGAAATTTGTAATAAAATTAAATAATTTGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCATATAAAAATATGCAGTGCCTACACAGGAAATCCCCAATTTTAAATAGCTATGTT
CTAAGATTGCAAATTGGATTGTTCCAAAATCAGACTACATCTCCTCATATAAATAATATT
TTTGTGAATAATAGAGGTAACAGTTTAGCTAGTGCTCTCCTGGTTTGGAATAAATTGTTA
GTGACTATAGATAGCCCTTTTACCTCTCTTAAAAACAAACACATTGCTGTTAGCACAGGT
TACTATCAATTAGTAGAACATTAAGTTTAAAAGTGGAAATAATTTAATTAGTCTTAGCAA
AACTATTTTGAGACAAGAGCTATCACTTAAGTTACCTAACTTGGGAATCTGCTTCTCTTG
CTAAAACCATATGATGTCTGAAGGTGCTGTATATTTTCAGTGACCTTGAGGAAAGGAGCT
GGTCATTTCTTTTTATGGGTCATATGCCGTCAGGGCTTTGCTGATGCCATGCTTTTCAGT
TCAAGAGCTGTGTCCGGAACATCCTAGATATCCATCACCCATACTGTTCTTCTAAGACCA
TCTGTGTTGCAGGCTCAGTCTCTCTCCCTTAGGCAGGCCTCTCCTCCAGCTTTGCTCCTT
GGTACTAAATTTACAGGTGAGCACTATTCATTCTTGTTAAAAAAAAAAAAAAAATTCCTC
GTTTTACTGTTATCAACAATGACCATAACTTTCTCCTTTTTTTCAAGAGATATAAAGGTA
GAGATGGTATTCCTTTTTCATTAAAAAAAAAAAAACTATAATTTTTAAACAACTGGCACT
TAGCAATTTAGTTTTCAGACCCTTTTCTGAATTAAATTGATGAGGTGATTCTAAAATTGA
TTCTAAAGTTTTAATCTTGCTTTATCATATAAACATCTAGTTAGAAACTGTTTATGCTAA
TAAAGACTTGTATTTTGTGGCATTCGTTCTTCATGTTCCTTTTTTATGTATTTAAAATTG
TTCATTCATTTCCAAATGAGTGGAAAAGTGACTGTTGTTGAGATATGTATAGGGCAAGTG
CACTTGATTAGAGCATGAACTGTATTTTCACATTAGCTGGATGTGCTTTGCACTCTGCTC
TTGTAGATTTATTTTGTTTACAGTAGACTGATGTCAGTTTTTGTAAATGTTTTTACTTAG
CACTTTAACTGTGAGTGTACAAACTGATTTTAAATGTAGTGGTTGTATATTTTGGTTATA
AATTGGAAATTTGTAATAAAATTAAATAATTTGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1045-1162, - strand, RNAz p=0.7843

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1045-1162, - strand, RNAz p=0.7843

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-143, gnl|bosTau2|chr8 (4963470-4963327)
               

               
               1-143, gnl|canFam2|chr25 (31963925-31963666)
               

               
               1-143, gnl|dasNov1|scaffold_109024 (1895-2149)
               

               
               1-143, gnl|echTel1|scaffold_297618 (599-850)
               

               
               1-143, gnl|hg17|chr8 (28486165-28486403)
               

               
               1-143, gnl|Hg17|chr8 (28486265-28486397)
               

               
               1-143, gnl|loxAfr1|scaffold_136475 (4579-4327)
               

               
               1-143, gnl|mm7|chr14 (60053555-60053318)
               

               
               1-143, gnl|Mm7|chr14 (60053448-60053318)
               

               
               1-143, gnl|oryCun1|scaffold_205376 (9847-9616)
               

               
               1-143, gnl|panTro1|chr7 (29473344-29473582)
               

               
               1-143, gnl|rheMac2|chr8 (28722247-28722492)
               

               
               1-143, gnl|rn3|chr15 (44535635-44535378)
               


               
               144-1236, gnl|bosTau2|chr8 (4963291-4962198)
               

               
               144-1236, gnl|Hg17|chr8 (28486436-28487692)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr8 (4963470-4963327)
               

               
               1-143, gnl|canFam2|chr25 (31963925-31963666)
               

               
               1-143, gnl|dasNov1|scaffold_109024 (1895-2149)
               

               
               1-143, gnl|echTel1|scaffold_297618 (599-850)
               

               
               1-143, gnl|hg17|chr8 (28486165-28486403)
               

               
               1-143, gnl|Hg17|chr8 (28486265-28486397)
               

               
               1-143, gnl|loxAfr1|scaffold_136475 (4579-4327)
               

               
               1-143, gnl|mm7|chr14 (60053555-60053318)
               

               
               1-143, gnl|Mm7|chr14 (60053448-60053318)
               

               
               1-143, gnl|oryCun1|scaffold_205376 (9847-9616)
               

               
               1-143, gnl|panTro1|chr7 (29473344-29473582)
               

               
               1-143, gnl|rheMac2|chr8 (28722247-28722492)
               

               
               1-143, gnl|rn3|chr15 (44535635-44535378)
               


               
               144-1236, gnl|bosTau2|chr8 (4963291-4962198)
               

               
               144-1236, gnl|Hg17|chr8 (28486436-28487692)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               hyp (0.42851)
               

               
               col (0.195008)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               col (0.195008)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               ecc (0.115035)

	1-143, gnl\|bosTau2\|chr8 (4963470-4963327)
	1-143, gnl\|canFam2\|chr25 (31963925-31963666)
	1-143, gnl\|dasNov1\|scaffold_109024 (1895-2149)
	1-143, gnl\|echTel1\|scaffold_297618 (599-850)
	1-143, gnl\|hg17\|chr8 (28486165-28486403)
	1-143, gnl\|Hg17\|chr8 (28486265-28486397)
	1-143, gnl\|loxAfr1\|scaffold_136475 (4579-4327)
	1-143, gnl\|mm7\|chr14 (60053555-60053318)
	1-143, gnl\|Mm7\|chr14 (60053448-60053318)
	1-143, gnl\|oryCun1\|scaffold_205376 (9847-9616)
	1-143, gnl\|panTro1\|chr7 (29473344-29473582)
	1-143, gnl\|rheMac2\|chr8 (28722247-28722492)
	1-143, gnl\|rn3\|chr15 (44535635-44535378)

	144-1236, gnl\|bosTau2\|chr8 (4963291-4962198)
	144-1236, gnl\|Hg17\|chr8 (28486436-28487692)

	hyp (0.42851)
	col (0.195008)
	fco (0.157208)
	csk (0.140746)
	ecc (0.115035)