Non-Coding RNA Search

Ss1.1-Pig4-TMW8047H12.3

Sequence:


               
               CAGCACATTGCTTCTCCTTTTATCTCCCAGGCGAACAAGAGTGAACACTAAAGAAAAGTC
TTGGCTGTGAGAATTGGAGGCTCAGGGGGCCAAATGCCCTTGCCAGAGCCTTAGAGCATC
TTTACTTTGACTCCTAAAAATAGTAGCACATGTTAAATAGTAGCCTTTGTTTCCCTGGGT
CTATCATTGACATTATAACTATAGATGGTGTCAATGGAGCAGCAGCCCAGCCTAGAAAGA
CAGGTTCTTACCCAAGTGCGGCAACAGTCGAGGGTTTAGACAAATAGGACGAGGAAGACT
ATGCATGATTTTAGGAAAAGGGTTGAAGGGAGGACGTGCTTCCAAAAAAGATCTTTCTCA
ATGTGTCGTCTGACTCAACCAGCTGGCAAATTACACTTGCCAAGTCGCTCTCTTCCCTTC
TAAGTCGGTTGTCTCCCTGTTCACTTGATTCCACCTCTGCTTCGGGAAAGGAGGGGCTAT
CTCTCATGAGCCTTTCCCCAAGGAAGCTCCTGGCATCCTCTTGGTCACAAAGTTGTTGCC
CCCTGTCCCTCACAGTTTCATCAAATAGAAGTAAAGGGGACAAGCAATGGAAGATGCTTT
CTATGGCATTGCAGTCAGCCACCACTCTGTTTTCCATTCAAGGAACTCTGCTACTTAAAT
TAGGGAGAAGAGCAGAATGGATCTGGTTTCATCATTTCAAGAGTGTGGATCACCCTTCCT
TAGTTGTCCTCATTTGATGAGACATTTGTTTCCTTGGAGAAAGTGATAATCTTCACTGAA
ACTCTACTCTTCCTGATGTTCTGTTTATACCTTATTCAATGTCAACACTAGTCACTTTCT
GTTTTTTAGAGAATCAGGTGTTAGTGCTAGATAAGAGTTCAGAAATCTCTGTGTGACGTC
AAAAGGGGCATTGGAATACTATGGAGTTTTTCCTCCTTGGGAACAAGATGGGCTGGGAAA
GAGACAGCATGGCTTTGCTCCAGGTTTCAATCTGATCGAGACTATAAGAGTTTTATGTAG
ATATTAAATGTTATTTACAAGTGAATAGATCAAGGAGAAGGGGGAGAAGCCAGGTTTTGT
CTATGCTACTTGTGTCAACAAGAACTTCCTACTAACAAAGTACAGTCATAGCCCCACCAT
GATCAGCTGCTAGTCTGAATAACATTCTCTGACTTAAAAAAACACACACACACAAAAAAC
ATATAGGGAATATGCCTTTTTCATATGTATGATACTGACAGAGCCATAGTATTCCCAAAA
TATATTTCTCTTTTTCATTCTTAGCAAATTGCATTTGTCCACTACATCATGAACCATCAC
TGACACATGCAAAATAGCCCTCATGGTTCCTTATGAAAATAAGAGAATAAAACCTGTTAT
AAGCAAGTGATTTGGGTATTTTCTTTTGTATTTATACATCACCAACTATTTTAAATCATG
TTTCTATTTACCTTCTATGAGTTTTTTCCTATCAATTATGTTTTTACACTGCTCTATGAG
AATAAATATGAAAATCATATTCCTTTTTTCTGTAAAAGAATTACAACTACTTTATTATAT
TTAGAAATCCAATAAACTTATTACATTTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACATTGCTTCTCCTTTTATCTCCCAGGCGAACAAGAGTGAACACTAAAGAAAAGTC
TTGGCTGTGAGAATTGGAGGCTCAGGGGGCCAAATGCCCTTGCCAGAGCCTTAGAGCATC
TTTACTTTGACTCCTAAAAATAGTAGCACATGTTAAATAGTAGCCTTTGTTTCCCTGGGT
CTATCATTGACATTATAACTATAGATGGTGTCAATGGAGCAGCAGCCCAGCCTAGAAAGA
CAGGTTCTTACCCAAGTGCGGCAACAGTCGAGGGTTTAGACAAATAGGACGAGGAAGACT
ATGCATGATTTTAGGAAAAGGGTTGAAGGGAGGACGTGCTTCCAAAAAAGATCTTTCTCA
ATGTGTCGTCTGACTCAACCAGCTGGCAAATTACACTTGCCAAGTCGCTCTCTTCCCTTC
TAAGTCGGTTGTCTCCCTGTTCACTTGATTCCACCTCTGCTTCGGGAAAGGAGGGGCTAT
CTCTCATGAGCCTTTCCCCAAGGAAGCTCCTGGCATCCTCTTGGTCACAAAGTTGTTGCC
CCCTGTCCCTCACAGTTTCATCAAATAGAAGTAAAGGGGACAAGCAATGGAAGATGCTTT
CTATGGCATTGCAGTCAGCCACCACTCTGTTTTCCATTCAAGGAACTCTGCTACTTAAAT
TAGGGAGAAGAGCAGAATGGATCTGGTTTCATCATTTCAAGAGTGTGGATCACCCTTCCT
TAGTTGTCCTCATTTGATGAGACATTTGTTTCCTTGGAGAAAGTGATAATCTTCACTGAA
ACTCTACTCTTCCTGATGTTCTGTTTATACCTTATTCAATGTCAACACTAGTCACTTTCT
GTTTTTTAGAGAATCAGGTGTTAGTGCTAGATAAGAGTTCAGAAATCTCTGTGTGACGTC
AAAAGGGGCATTGGAATACTATGGAGTTTTTCCTCCTTGGGAACAAGATGGGCTGGGAAA
GAGACAGCATGGCTTTGCTCCAGGTTTCAATCTGATCGAGACTATAAGAGTTTTATGTAG
ATATTAAATGTTATTTACAAGTGAATAGATCAAGGAGAAGGGGGAGAAGCCAGGTTTTGT
CTATGCTACTTGTGTCAACAAGAACTTCCTACTAACAAAGTACAGTCATAGCCCCACCAT
GATCAGCTGCTAGTCTGAATAACATTCTCTGACTTAAAAAAACACACACACACAAAAAAC
ATATAGGGAATATGCCTTTTTCATATGTATGATACTGACAGAGCCATAGTATTCCCAAAA
TATATTTCTCTTTTTCATTCTTAGCAAATTGCATTTGTCCACTACATCATGAACCATCAC
TGACACATGCAAAATAGCCCTCATGGTTCCTTATGAAAATAAGAGAATAAAACCTGTTAT
AAGCAAGTGATTTGGGTATTTTCTTTTGTATTTATACATCACCAACTATTTTAAATCATG
TTTCTATTTACCTTCTATGAGTTTTTTCCTATCAATTATGTTTTTACACTGCTCTATGAG
AATAAATATGAAAATCATATTCCTTTTTTCTGTAAAAGAATTACAACTACTTTATTATAT
TTAGAAATCCAATAAACTTATTACATTTAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.514338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.514338

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1589, gnl|bosTau2|chr1 (49003453-49005038)
               

               
               1-1589, gnl|Hg17|chr3 (190089551-190091162)
               

               
               1-1589, gnl|Mm7|chr16 (24651341-24652893)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1589, gnl|bosTau2|chr1 (49003453-49005038)
               

               
               1-1589, gnl|Hg17|chr3 (190089551-190091162)
               

               
               1-1589, gnl|Mm7|chr16 (24651341-24652893)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               gul (1.77588)
               

               
               aor (0.976372)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               eje (0.197668)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.77588)
               

               
               aor (0.976372)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               eje (0.197668)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-1589, gnl\|bosTau2\|chr1 (49003453-49005038)
	1-1589, gnl\|Hg17\|chr3 (190089551-190091162)
	1-1589, gnl\|Mm7\|chr16 (24651341-24652893)

	gul (1.77588)
	aor (0.976372)
	pro (0.512033)
	mgp (0.461361)
	lin (0.436808)
	amn (0.417711)
	sag (0.36543)
	mgm (0.360685)
	rec (0.346141)
	eye (0.341006)
	fat (0.294855)
	liv (0.292569)
	spl (0.286369)
	lyg (0.266205)
	bla (0.248694)
	eje (0.197668)
	duo (0.172801)
	mga (0.160205)
	ski (0.146735)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	clu (0.119646)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)