Ss1.1-Pig4-TMW8047H18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCGGGCGCCATGTTAGGACGAAGGGGAAGGAGGAGAAGCGCTTAAAGCGGCGGGAGCG GGTGCGGGAGTGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAG TGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCC GGCGCAGGAGACGATGCCGTTTCCAGTTACAACGCAGGGATCACAACAGACACAGCCGCC ACAGAAGCACTATGGCATTACCTCTCCCATCAGCTTAGCAGCCCCCAAGGAGACTGACTG CCTGCTTACACAGAAGCTCATTGAGACTCTGAAGCCCTTTGGGGTTTTTGAAGAGGAAGA GGAACTGCAGCGCAGGATTTTAATTTTGGGGAAATTAAATAACCTGGTCAAAGAGTGGAT ACGAGAAATCAGTGAAAGCAAGAATCTTCCACAGTCTGTAATTGAAAATGTTGGTGGGAA AATTTTTACATTTGGATCTTACAGATTAGGAGTACACACAAAAGGTGCCGATATTGATGC GTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCTATGATAA GTTGAAATTGCAGGAAGAAGTGAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTACCAGT TATCAAACTGTGTTTTGATGGGATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCA GACTATTCCAGAAGACTTGGACTTACGAGATGACAGTCTGCTTAAAAATTTAGATATAAG ATGTATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACATCTAGTACCAAA CATTGACAACTTCAGGTTAACCCTGAGAGCTATCAAACTGTGGGCCAAACGCCACAACAT CTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAAC TTGCCAGCTTTATCCAAATGCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATT TTCTAAATGGTATGTGTTTAGATTAGTCCTATTGAAACAGCCTGAAGAATGCAATCTTAA TTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAAT TACACCAGCATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCTACACGGATGGT CATGGTTGAGGAGTTTAAACAAGGTCTTGCTATCACAGATGAAATTTTGCTGAGTAAGGC AGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGTATGTATTTTA AGGCATGTCGGACGTGTTGCTCTCTTAAGTAATGGTTTAATGGTAGCATATGTGACATCT TTTCTTACTAGACTAATGTAGTTTTGAATTTTCCTTTAAACATCTTCTATATAAGTTTTC TTCCTGTCACAAAGCACATACTGTTTTTAGTAAAACCCCTTCCTATCTCTTTGTCAAGGT AAAGTGTAGTCCCTGCAGTTTTTTGTTGTCCGATGTAACCGAATTTCTACATTTGTAGCA ACATCAGTTCTGAAGGCTTGTTAGTCATCACCAAAACTCTAAATCTGTATGCCTTGGCAA AGGAGCGAACGGTTAAAATCTGTAGTTAATACTTTCTAAGAAGTAAGTTTTTTCAGCCAG TTCTGGAAACTTATTTATCGTAAGATTCTCTATAACATAGGCATAGCTAATAAAATGTCA ATAATGTAGCCAGAAAAAATGTTTCCAGTGGTTAAAGCACACAGTAGGCCTACCATTTCC CCCTAATGTTAATAAAGCCCCCTCAAATATTTCTACAAATACTTTTCATGGATTTTAGTG GGTGTAATTTTTTTTTTTTAACTAATGGTTTTAATATAATGGTTTAATACCTTAGTACAG GTTAAAAGCCTGATTGTGTTGGTTTTGATGAAAACTGTAAGTTATAATAAATCTTACTTT AAAAAAAATGGACTTGCACTTTTATTTGCCCTGAGCTGAAAACTTGCCAAAGTCCCACTT AAAATTTTTTTTTCTTTAATGCTTGAAACTTTCCTGACCATTTGATCTTGTGTTGGATTG TGTTTTGTAATAATCTAAGCAAGATTGCTTTATGCTATTTCCCCAATTAAAAACAAGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCGGGCGCCATGTTAGGACGAAGGGGAAGGAGGAGAAGCGCTTAAAGCGGCGGGAGCG GGTGCGGGAGTGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAG TGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCC GGCGCAGGAGACGATGCCGTTTCCAGTTACAACGCAGGGATCACAACAGACACAGCCGCC ACAGAAGCACTATGGCATTACCTCTCCCATCAGCTTAGCAGCCCCCAAGGAGACTGACTG CCTGCTTACACAGAAGCTCATTGAGACTCTGAAGCCCTTTGGGGTTTTTGAAGAGGAAGA GGAACTGCAGCGCAGGATTTTAATTTTGGGGAAATTAAATAACCTGGTCAAAGAGTGGAT ACGAGAAATCAGTGAAAGCAAGAATCTTCCACAGTCTGTAATTGAAAATGTTGGTGGGAA AATTTTTACATTTGGATCTTACAGATTAGGAGTACACACAAAAGGTGCCGATATTGATGC GTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCTATGATAA GTTGAAATTGCAGGAAGAAGTGAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTACCAGT TATCAAACTGTGTTTTGATGGGATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCA GACTATTCCAGAAGACTTGGACTTACGAGATGACAGTCTGCTTAAAAATTTAGATATAAG ATGTATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACATCTAGTACCAAA CATTGACAACTTCAGGTTAACCCTGAGAGCTATCAAACTGTGGGCCAAACGCCACAACAT CTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAAC TTGCCAGCTTTATCCAAATGCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATT TTCTAAATGGTATGTGTTTAGATTAGTCCTATTGAAACAGCCTGAAGAATGCAATCTTAA TTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAAT TACACCAGCATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCTACACGGATGGT CATGGTTGAGGAGTTTAAACAAGGTCTTGCTATCACAGATGAAATTTTGCTGAGTAAGGC AGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGTATGTATTTTA AGGCATGTCGGACGTGTTGCTCTCTTAAGTAATGGTTTAATGGTAGCATATGTGACATCT TTTCTTACTAGACTAATGTAGTTTTGAATTTTCCTTTAAACATCTTCTATATAAGTTTTC TTCCTGTCACAAAGCACATACTGTTTTTAGTAAAACCCCTTCCTATCTCTTTGTCAAGGT AAAGTGTAGTCCCTGCAGTTTTTTGTTGTCCGATGTAACCGAATTTCTACATTTGTAGCA ACATCAGTTCTGAAGGCTTGTTAGTCATCACCAAAACTCTAAATCTGTATGCCTTGGCAA AGGAGCGAACGGTTAAAATCTGTAGTTAATACTTTCTAAGAAGTAAGTTTTTTCAGCCAG TTCTGGAAACTTATTTATCGTAAGATTCTCTATAACATAGGCATAGCTAATAAAATGTCA ATAATGTAGCCAGAAAAAATGTTTCCAGTGGTTAAAGCACACAGTAGGCCTACCATTTCC CCCTAATGTTAATAAAGCCCCCTCAAATATTTCTACAAATACTTTTCATGGATTTTAGTG GGTGTAATTTTTTTTTTTTAACTAATGGTTTTAATATAATGGTTTAATACCTTAGTACAG GTTAAAAGCCTGATTGTGTTGGTTTTGATGAAAACTGTAAGTTATAATAAATCTTACTTT AAAAAAAATGGACTTGCACTTTTATTTGCCCTGAGCTGAAAACTTGCCAAAGTCCCACTT AAAATTTTTTTTTCTTTAATGCTTGAAACTTTCCTGACCATTTGATCTTGTGTTGGATTG TGTTTTGTAATAATCTAAGCAAGATTGCTTTATGCTATTTCCCCAATTAAAAACAAGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-117, + strand, RNAz p=0.528206 | |
| 673-912, - strand, RNAz p=0.947411 | |
| 693-1232, - strand, RNAz p=0.80635 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-117, + strand, RNAz p=0.528206 | |
| 673-912, - strand, RNAz p=0.947411 | |
| 693-1232, - strand, RNAz p=0.80635 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-1319, gnl|bosTau2|chr25 (37411705-37413020) | |
| 1-1319, gnl|Hg17|chr7 (4674877-4673555) | |
| 1-1319, gnl|Mm7|chr5 (141507770-141506455) | |
| 64-810, gnl|bosTau2|chr17 (12948583-12949325) | |
| 64-810, gnl|Hg17|chr7 (4674809-4674063) | |
| 64-810, gnl|Mm7|chr5 (141507719-141506963) | |
| 822-1045, gnl|bosTau2|chr17 (12949367-12949590) | |
| 822-1045, gnl|Hg17|chr7 (4674050-4673844) | |
| 822-1045, gnl|Mm7|chr5 (141506950-141506730) | |
| 899-1035, gnl|bosTau2|chr11 (29812411-29812547) | |
| 899-1035, gnl|danRer3|chr13 (25517817-25517968) | |
| 899-1035, gnl|dasNov1|scaffold_5373 (3784-3942) | |
| 899-1035, gnl|echTel1|scaffold_292076 (40468-40633) | |
| 899-1035, gnl|fr1|chrUn (195018705-195018850) | |
| 899-1035, gnl|galGal2|chr3 (434450-434293) | |
| 899-1035, gnl|hg17|chr2 (60918410-60918574) | |
| 899-1035, gnl|Hg17|chr2 (60918431-60918567) | |
| 899-1035, gnl|loxAfr1|scaffold_62586 (18429-18264) | |
| 899-1035, gnl|mm7|chr11 (23828479-23828315) | |
| 899-1035, gnl|Mm7|chr11 (23828456-23828320) | |
| 899-1035, gnl|monDom2|scaffold_1 (25468946-25469103) | |
| 899-1035, gnl|oryCun1|scaffold_201876 (45794-45960) | |
| 899-1035, gnl|panTro1|chr12 (63126707-63126871) | |
| 899-1035, gnl|rheMac2|chr13 (60942331-60942495) | |
| 899-1035, gnl|rn3|chr14 (104832915-104832751) | |
| 899-1035, gnl|tetNig1|chrUn_random (139426164-139426316) | |
| 899-1035, gnl|xenTro1|scaffold_562 (210862-211022) | |
| 1102-1225, gnl|bosTau2|chr11 (29813864-29813987) | |
| 1102-1225, gnl|canFam2|chr10 (64047491-64047649) | |
| 1102-1225, gnl|danRer3|chr13 (25518251-25518405) | |
| 1102-1225, gnl|echTel1|scaffold_292076 (42430-42586) | |
| 1102-1225, gnl|fr1|chrUn (195019130-195019260) | |
| 1102-1225, gnl|galGal2|chr3 (434018-433856) | |
| 1102-1225, gnl|hg17|chr2 (60920638-60920796) | |
| 1102-1225, gnl|Hg17|chr2 (60920670-60920793) | |
| 1102-1225, gnl|loxAfr1|scaffold_9857 (68331-68489) | |
| 1102-1225, gnl|mm7|chr11 (23825950-23825793) | |
| 1102-1225, gnl|Mm7|chr11 (23825917-23825794) | |
| 1102-1225, gnl|monDom2|scaffold_1 (25472874-25473032) | |
| 1102-1225, gnl|oryCun1|scaffold_15280 (252-94) | |
| 1102-1225, gnl|panTro1|chr12 (63128938-63129096) | |
| 1102-1225, gnl|rheMac2|chr13 (60944584-60944742) | |
| 1102-1225, gnl|rn3|chr14 (104830319-104830162) | |
| 1102-1225, gnl|tetNig1|chrUn_random (139426842-139426972) | |
| 1102-1225, gnl|xenTro1|scaffold_562 (211286-211430) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1319, gnl|bosTau2|chr25 (37411705-37413020) | |
| 1-1319, gnl|Hg17|chr7 (4674877-4673555) | |
| 1-1319, gnl|Mm7|chr5 (141507770-141506455) | |
| 64-810, gnl|bosTau2|chr17 (12948583-12949325) | |
| 64-810, gnl|Hg17|chr7 (4674809-4674063) | |
| 64-810, gnl|Mm7|chr5 (141507719-141506963) | |
| 822-1045, gnl|bosTau2|chr17 (12949367-12949590) | |
| 822-1045, gnl|Hg17|chr7 (4674050-4673844) | |
| 822-1045, gnl|Mm7|chr5 (141506950-141506730) | |
| 899-1035, gnl|bosTau2|chr11 (29812411-29812547) | |
| 899-1035, gnl|danRer3|chr13 (25517817-25517968) | |
| 899-1035, gnl|dasNov1|scaffold_5373 (3784-3942) | |
| 899-1035, gnl|echTel1|scaffold_292076 (40468-40633) | |
| 899-1035, gnl|fr1|chrUn (195018705-195018850) | |
| 899-1035, gnl|galGal2|chr3 (434450-434293) | |
| 899-1035, gnl|hg17|chr2 (60918410-60918574) | |
| 899-1035, gnl|Hg17|chr2 (60918431-60918567) | |
| 899-1035, gnl|loxAfr1|scaffold_62586 (18429-18264) | |
| 899-1035, gnl|mm7|chr11 (23828479-23828315) | |
| 899-1035, gnl|Mm7|chr11 (23828456-23828320) | |
| 899-1035, gnl|monDom2|scaffold_1 (25468946-25469103) | |
| 899-1035, gnl|oryCun1|scaffold_201876 (45794-45960) | |
| 899-1035, gnl|panTro1|chr12 (63126707-63126871) | |
| 899-1035, gnl|rheMac2|chr13 (60942331-60942495) | |
| 899-1035, gnl|rn3|chr14 (104832915-104832751) | |
| 899-1035, gnl|tetNig1|chrUn_random (139426164-139426316) | |
| 899-1035, gnl|xenTro1|scaffold_562 (210862-211022) | |
| 1102-1225, gnl|bosTau2|chr11 (29813864-29813987) | |
| 1102-1225, gnl|canFam2|chr10 (64047491-64047649) | |
| 1102-1225, gnl|danRer3|chr13 (25518251-25518405) | |
| 1102-1225, gnl|echTel1|scaffold_292076 (42430-42586) | |
| 1102-1225, gnl|fr1|chrUn (195019130-195019260) | |
| 1102-1225, gnl|galGal2|chr3 (434018-433856) | |
| 1102-1225, gnl|hg17|chr2 (60920638-60920796) | |
| 1102-1225, gnl|Hg17|chr2 (60920670-60920793) | |
| 1102-1225, gnl|loxAfr1|scaffold_9857 (68331-68489) | |
| 1102-1225, gnl|mm7|chr11 (23825950-23825793) | |
| 1102-1225, gnl|Mm7|chr11 (23825917-23825794) | |
| 1102-1225, gnl|monDom2|scaffold_1 (25472874-25473032) | |
| 1102-1225, gnl|oryCun1|scaffold_15280 (252-94) | |
| 1102-1225, gnl|panTro1|chr12 (63128938-63129096) | |
| 1102-1225, gnl|rheMac2|chr13 (60944584-60944742) | |
| 1102-1225, gnl|rn3|chr14 (104830319-104830162) | |
| 1102-1225, gnl|tetNig1|chrUn_random (139426842-139426972) | |
| 1102-1225, gnl|xenTro1|scaffold_562 (211286-211430) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| aor (0.585823) | |
| cty (0.5204) | |
| ova (0.516529) | |
| mga (0.480615) | |
| lin (0.436808) | |
| spl (0.429553) | |
| sug (0.381874) | |
| gul (0.355177) | |
| liv (0.292569) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| tra (0.246184) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.585823) | |
| cty (0.5204) | |
| ova (0.516529) | |
| mga (0.480615) | |
| lin (0.436808) | |
| spl (0.429553) | |
| sug (0.381874) | |
| gul (0.355177) | |
| liv (0.292569) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| tra (0.246184) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| ldo (0.0970026) |