Non-Coding RNA Search

Ss1.1-Pig4-TMW8047H20.5

Sequence:


               
               GCAGCATCTATTTGATAAGGAATTGAATGTCCCAGTGACTATAAAGTAAAGCCACAGACC
AATTTGGGAAAGGTCTTTAAATTTTGAGCCTTTGCTCCAAGATTAATATTCCTTTCCTTT
TTTAAAATAAAAAGTGTTTGTACACATGGTAGTGATGTTCATCCTCAGTTTAACTTAATG
GATTGAGAAACAGTTGAAGTTCATTCTATTTTTCAGTGAATAAGGCTGTTGAACCAATGA
TTTAATATTAAATTTAGGTTTAATTTCTTGTTTAGAAACATTAAATCAAATATCCCTTCT
TAAGATAGCATCGTCTTTGATAACTGGAGTGCTAATTTGAATGTCAAATAATGCTTCTAC
ATCTACTTCTGTTTCTCTACGGTGGCACATGTAGCCCTATGGGGTGGCTTTTAGGTCACG
ATATTGTGTTGGGTTCTCTATATATGTATATTTAATGAAAAACATTTCTATGTAAAAATA
TGTCACATGGTTGTTTGCATACATTCTTATTGTGAACCTATACATTGCGAAAAAGTAGTT
TGGAAATTTGTAAAGCACAACCATAAAAGAAAATAGTGTTCAGTTATTAAACTTGATGTA
GCTTAAATATAATTTTTAGTTTATAAAAGGTTCTTTCTATTTTCTATGGCAAAGACTTTG
ACACGAAAAATAGAAGCAATACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCATCTATTTGATAAGGAATTGAATGTCCCAGTGACTATAAAGTAAAGCCACAGACC
AATTTGGGAAAGGTCTTTAAATTTTGAGCCTTTGCTCCAAGATTAATATTCCTTTCCTTT
TTTAAAATAAAAAGTGTTTGTACACATGGTAGTGATGTTCATCCTCAGTTTAACTTAATG
GATTGAGAAACAGTTGAAGTTCATTCTATTTTTCAGTGAATAAGGCTGTTGAACCAATGA
TTTAATATTAAATTTAGGTTTAATTTCTTGTTTAGAAACATTAAATCAAATATCCCTTCT
TAAGATAGCATCGTCTTTGATAACTGGAGTGCTAATTTGAATGTCAAATAATGCTTCTAC
ATCTACTTCTGTTTCTCTACGGTGGCACATGTAGCCCTATGGGGTGGCTTTTAGGTCACG
ATATTGTGTTGGGTTCTCTATATATGTATATTTAATGAAAAACATTTCTATGTAAAAATA
TGTCACATGGTTGTTTGCATACATTCTTATTGTGAACCTATACATTGCGAAAAAGTAGTT
TGGAAATTTGTAAAGCACAACCATAAAAGAAAATAGTGTTCAGTTATTAAACTTGATGTA
GCTTAAATATAATTTTTAGTTTATAAAAGGTTCTTTCTATTTTCTATGGCAAAGACTTTG
ACACGAAAAATAGAAGCAATACTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-683, gnl|bosTau2|chr3 (57505198-57504637)
               

               
               111-683, gnl|Hg17|chr1 (60053400-60053956)
               

               
               111-683, gnl|Mm7|chr4 (95417423-95417920)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-683, gnl|bosTau2|chr3 (57505198-57504637)
               

               
               111-683, gnl|Hg17|chr1 (60053400-60053956)
               

               
               111-683, gnl|Mm7|chr4 (95417423-95417920)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               tra (0.492368)
               

               
               ret (0.3862)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               ret (0.3862)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

	111-683, gnl\|bosTau2\|chr3 (57505198-57504637)
	111-683, gnl\|Hg17\|chr1 (60053400-60053956)
	111-683, gnl\|Mm7\|chr4 (95417423-95417920)

	tra (0.492368)
	ret (0.3862)
	lin (0.291206)
	cbe (0.239234)
	sag (0.182715)
	mgm (0.180343)
	csp (0.161186)
	mga (0.160205)
	lyg (0.133103)
	nmm (0.132802)
	eje (0.0988338)