Non-Coding RNA Search

Ss1.1-Pig4-TMW8047I01.3

Sequence:


               
               ACACCCCCAGCCCTGAACCACTCCGTCCCTCTGCGTTTGATCCCACCTGCTTCTTCAGGG
TGGCGCCTTCCTCTTGCTTTTCCAAAGCCTTTGGGGCGGTGGGACGGGGGCCCGCTGGTC
TGGGTGTTAAGATGTGAAAGCCTTCCTAGCAGTTTTGTGTCCATAGGTCTGTCCTCCCGG
CTGATTTAGCCTCTTGCCTGTGGGTGGATGTGTCCACCTGAGTGTGTCGCTAAACCAGCT
GGGGTAACTCCTGTCCTGCTCTGAATGGCGTGGTGTGCAAAAAGCAGCCTCAAACTGCGA
GCTCAGTAACTTTGACTACTTTTGTATGGGAATTTCAGACTTTCAATACTCTCAAGTTTT
TTTGTCCAGGTTCTGTGACCACTAGTTACTGTATCAGAACTCGTCAGGTACTCGTTTATA
AATAGCACTGATCTGTCTGTATACTGATTCATCACTAACTTGTTTCCTAGGACCCAGCAT
ATGTAGCATTTGTATTGCAATTTCCCTGGCTTACTTGTGTTTTGCACTGATGAATTTTGA
CAGGGTAATTGCCACTTTACTTGTGCAATACTGCTGTAAATAACTGCAAATTTTTTTTTT
AAGAAACTCGATCTTTTATGTTCTTAATTTTATATAAATAAAACTTTCAACTAGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCCCCAGCCCTGAACCACTCCGTCCCTCTGCGTTTGATCCCACCTGCTTCTTCAGGG
TGGCGCCTTCCTCTTGCTTTTCCAAAGCCTTTGGGGCGGTGGGACGGGGGCCCGCTGGTC
TGGGTGTTAAGATGTGAAAGCCTTCCTAGCAGTTTTGTGTCCATAGGTCTGTCCTCCCGG
CTGATTTAGCCTCTTGCCTGTGGGTGGATGTGTCCACCTGAGTGTGTCGCTAAACCAGCT
GGGGTAACTCCTGTCCTGCTCTGAATGGCGTGGTGTGCAAAAAGCAGCCTCAAACTGCGA
GCTCAGTAACTTTGACTACTTTTGTATGGGAATTTCAGACTTTCAATACTCTCAAGTTTT
TTTGTCCAGGTTCTGTGACCACTAGTTACTGTATCAGAACTCGTCAGGTACTCGTTTATA
AATAGCACTGATCTGTCTGTATACTGATTCATCACTAACTTGTTTCCTAGGACCCAGCAT
ATGTAGCATTTGTATTGCAATTTCCCTGGCTTACTTGTGTTTTGCACTGATGAATTTTGA
CAGGGTAATTGCCACTTTACTTGTGCAATACTGCTGTAAATAACTGCAAATTTTTTTTTT
AAGAAACTCGATCTTTTATGTTCTTAATTTTATATAAATAAAACTTTCAACTAGTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               460-578, + strand, RNAz p=0.890087

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               460-578, + strand, RNAz p=0.890087

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               4-206, gnl|bosTau2|chr11 (991775-991571)
               

               
               4-206, gnl|canFam2|chr17 (38777814-38778027)
               

               
               4-206, gnl|dasNov1|scaffold_249999 (3398-3621)
               

               
               4-206, gnl|echTel1|scaffold_210362 (2995-2737)
               

               
               4-206, gnl|hg17|chr2 (111641492-111641739)
               

               
               4-206, gnl|Hg17|chr2 (111641595-111641802)
               

               
               4-206, gnl|loxAfr1|scaffold_133118 (4715-4939)
               

               
               4-206, gnl|mm7|chr2 (127902739-127902909)
               

               
               4-206, gnl|monDom2|scaffold_1 (64904892-64904575)
               

               
               4-206, gnl|oryCun1|scaffold_196519 (18079-18266)
               

               
               4-206, gnl|panTro1|chr12_random (7122695-7122444)
               

               
               4-206, gnl|rheMac2|chr13 (110536357-110536606)
               

               
               4-206, gnl|rn3|chr3 (115631829-115632017)
               


               
               223-655, gnl|bosTau2|chr11 (991531-991114)
               

               
               223-655, gnl|Hg17|chr2 (111641843-111642252)
               

               
               223-655, gnl|Mm7|chr2 (127903010-127903395)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-206, gnl|bosTau2|chr11 (991775-991571)
               

               
               4-206, gnl|canFam2|chr17 (38777814-38778027)
               

               
               4-206, gnl|dasNov1|scaffold_249999 (3398-3621)
               

               
               4-206, gnl|echTel1|scaffold_210362 (2995-2737)
               

               
               4-206, gnl|hg17|chr2 (111641492-111641739)
               

               
               4-206, gnl|Hg17|chr2 (111641595-111641802)
               

               
               4-206, gnl|loxAfr1|scaffold_133118 (4715-4939)
               

               
               4-206, gnl|mm7|chr2 (127902739-127902909)
               

               
               4-206, gnl|monDom2|scaffold_1 (64904892-64904575)
               

               
               4-206, gnl|oryCun1|scaffold_196519 (18079-18266)
               

               
               4-206, gnl|panTro1|chr12_random (7122695-7122444)
               

               
               4-206, gnl|rheMac2|chr13 (110536357-110536606)
               

               
               4-206, gnl|rn3|chr3 (115631829-115632017)
               


               
               223-655, gnl|bosTau2|chr11 (991531-991114)
               

               
               223-655, gnl|Hg17|chr2 (111641843-111642252)
               

               
               223-655, gnl|Mm7|chr2 (127903010-127903395)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

	4-206, gnl\|bosTau2\|chr11 (991775-991571)
	4-206, gnl\|canFam2\|chr17 (38777814-38778027)
	4-206, gnl\|dasNov1\|scaffold_249999 (3398-3621)
	4-206, gnl\|echTel1\|scaffold_210362 (2995-2737)
	4-206, gnl\|hg17\|chr2 (111641492-111641739)
	4-206, gnl\|Hg17\|chr2 (111641595-111641802)
	4-206, gnl\|loxAfr1\|scaffold_133118 (4715-4939)
	4-206, gnl\|mm7\|chr2 (127902739-127902909)
	4-206, gnl\|monDom2\|scaffold_1 (64904892-64904575)
	4-206, gnl\|oryCun1\|scaffold_196519 (18079-18266)
	4-206, gnl\|panTro1\|chr12_random (7122695-7122444)
	4-206, gnl\|rheMac2\|chr13 (110536357-110536606)
	4-206, gnl\|rn3\|chr3 (115631829-115632017)

	223-655, gnl\|bosTau2\|chr11 (991531-991114)
	223-655, gnl\|Hg17\|chr2 (111641843-111642252)
	223-655, gnl\|Mm7\|chr2 (127903010-127903395)