Non-Coding RNA Search

Ss1.1-Pig4-TMW8047I02.3

Sequence:


               
               TGCTAAGCGGGGTGGACACAGTGCTGGGCAAGTCGGAGGAGTGGGTGGACAACCACCTCC
CCATGACGGACGCTGAGCTGGCCCACCTTGCCACGTCCCTGGAGGGCTTTGACATGGCCT
CGGTGGCCCAGCAGCGGCAGGATCAGAGCTACTTCGTGCGTCTGGGCTCCCTGTCGGAGA
GGCTGCGCCAGCGGGCCTATGAACACTCTCTAGGCAAACTACAGCACACCAGGCAGAGAG
CCCAGGAGGCCCTGCTGCAGCTGTCGCAAGCACTCAGCCTGATGGAAACTGTCAAGCAGG
GAGTTGATCAGAAGCTGGTGGAGGGTCAGGAGAAACTACACCAGATGTGGCTCAGTTGGA
ACCAGAAGCGGCTTCAGGGCGGGGAGGAAGACCCAGCCAAGCCAGAGCAGGTTGAGTCCC
AGACATTCACCATGTTCCGTGACGTCACCCAGCAGCTGCAGACCACCTGCGCCTCGCTGG
GCGCCAGCCTCCAGGGGCTGCCCGCCCACGTGAAGGAGCAGGCGCTGCAGGCTCGCCGCC
AAGTGGAGGACCTCCAGGCCACCTTCTCCGGGATGCACTCCTTCCAGGACCTGTCCAGCA
ACGTCCTGATGCAGAGCCGCGAGCAGGTGGCCAGGGCCCGAGAGGCCCTGGACCACGTGG
TGGATTATGTGGCTCAGAACACACCCGTCATGTGGCTGGTGGGACCCTTTGCCCCCGGAG
TTGTGGAGAAAGCCCCAGAAGAGAAGAAGTAGAAGAGACAGGAGAGGGGCTCGGATTGCC
CAGTCCTCCCTGAGGGGCTGGCAGGCCGCATGGGACACCCCACTGGGAACACGGGCTTCT
GTGCATTCCTCCCAGCTCATCGCAGCTGCCACCTTGGAAAACAGAGGTCCTTAAAACTGA
CCAGTCCCTCACCCTCTTGGAGCTTGGAGGAAGCACATCCTAAGCCCCGCAGCAGTCATT
AGGATGAGCGGTCCAGAAAAATTTTTTCTAGAAGCTCCCCCTGTCAAATTTTTTTTTCTC
CCTTAAAAGCCAGGGGTATACTTTTGATATCCCACTTGCTTTTCTACGTCAAGGGCCCTG
GATATCAGCTTTTAGCTAAGGGACGTGAGCTTCTCCAAAGTGGGCCTCCTGGGGATGGGG
TGGGGCCAGAACAGCTGACATTCATTCTAGAACAGAAGAGTGCTAAGGCCTGCCTGGCCA
GGTGGCTGCCTGGAGCTTAATAAATTTTACTTGCAGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTAAGCGGGGTGGACACAGTGCTGGGCAAGTCGGAGGAGTGGGTGGACAACCACCTCC
CCATGACGGACGCTGAGCTGGCCCACCTTGCCACGTCCCTGGAGGGCTTTGACATGGCCT
CGGTGGCCCAGCAGCGGCAGGATCAGAGCTACTTCGTGCGTCTGGGCTCCCTGTCGGAGA
GGCTGCGCCAGCGGGCCTATGAACACTCTCTAGGCAAACTACAGCACACCAGGCAGAGAG
CCCAGGAGGCCCTGCTGCAGCTGTCGCAAGCACTCAGCCTGATGGAAACTGTCAAGCAGG
GAGTTGATCAGAAGCTGGTGGAGGGTCAGGAGAAACTACACCAGATGTGGCTCAGTTGGA
ACCAGAAGCGGCTTCAGGGCGGGGAGGAAGACCCAGCCAAGCCAGAGCAGGTTGAGTCCC
AGACATTCACCATGTTCCGTGACGTCACCCAGCAGCTGCAGACCACCTGCGCCTCGCTGG
GCGCCAGCCTCCAGGGGCTGCCCGCCCACGTGAAGGAGCAGGCGCTGCAGGCTCGCCGCC
AAGTGGAGGACCTCCAGGCCACCTTCTCCGGGATGCACTCCTTCCAGGACCTGTCCAGCA
ACGTCCTGATGCAGAGCCGCGAGCAGGTGGCCAGGGCCCGAGAGGCCCTGGACCACGTGG
TGGATTATGTGGCTCAGAACACACCCGTCATGTGGCTGGTGGGACCCTTTGCCCCCGGAG
TTGTGGAGAAAGCCCCAGAAGAGAAGAAGTAGAAGAGACAGGAGAGGGGCTCGGATTGCC
CAGTCCTCCCTGAGGGGCTGGCAGGCCGCATGGGACACCCCACTGGGAACACGGGCTTCT
GTGCATTCCTCCCAGCTCATCGCAGCTGCCACCTTGGAAAACAGAGGTCCTTAAAACTGA
CCAGTCCCTCACCCTCTTGGAGCTTGGAGGAAGCACATCCTAAGCCCCGCAGCAGTCATT
AGGATGAGCGGTCCAGAAAAATTTTTTCTAGAAGCTCCCCCTGTCAAATTTTTTTTTCTC
CCTTAAAAGCCAGGGGTATACTTTTGATATCCCACTTGCTTTTCTACGTCAAGGGCCCTG
GATATCAGCTTTTAGCTAAGGGACGTGAGCTTCTCCAAAGTGGGCCTCCTGGGGATGGGG
TGGGGCCAGAACAGCTGACATTCATTCTAGAACAGAAGAGTGCTAAGGCCTGCCTGGCCA
GGTGGCTGCCTGGAGCTTAATAAATTTTACTTGCAGCAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|4206370|gb|AAD11620.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|4206370|gb|AAD11620.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               565-830, - strand, RNAz p=0.989224
               

               
               968-1057, - strand, RNAz p=0.963515

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               565-830, - strand, RNAz p=0.989224
               

               
               968-1057, - strand, RNAz p=0.963515

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               81-284, gnl|bosTau2|chr7 (14797985-14798188)
               

               
               81-284, gnl|Hg17|chr19 (4798903-4798700)
               

               
               81-284, gnl|Mm7|chr17 (54439856-54439653)
               


               
               406-830, gnl|bosTau2|chr7 (14803364-14803789)
               

               
               406-830, gnl|Hg17|chr19 (4790550-4790168)
               

               
               406-830, gnl|Mm7|chr17 (54438324-54437966)
               


               
               870-1201, gnl|bosTau2|chr7 (14803791-14804124)
               

               
               870-1201, gnl|Hg17|chr19 (4790076-4789411)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-284, gnl|bosTau2|chr7 (14797985-14798188)
               

               
               81-284, gnl|Hg17|chr19 (4798903-4798700)
               

               
               81-284, gnl|Mm7|chr17 (54439856-54439653)
               


               
               406-830, gnl|bosTau2|chr7 (14803364-14803789)
               

               
               406-830, gnl|Hg17|chr19 (4790550-4790168)
               

               
               406-830, gnl|Mm7|chr17 (54438324-54437966)
               


               
               870-1201, gnl|bosTau2|chr7 (14803791-14804124)
               

               
               870-1201, gnl|Hg17|chr19 (4790076-4789411)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               jej (0.395687)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.395687)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	565-830, - strand, RNAz p=0.989224
	968-1057, - strand, RNAz p=0.963515

	81-284, gnl\|bosTau2\|chr7 (14797985-14798188)
	81-284, gnl\|Hg17\|chr19 (4798903-4798700)
	81-284, gnl\|Mm7\|chr17 (54439856-54439653)

	406-830, gnl\|bosTau2\|chr7 (14803364-14803789)
	406-830, gnl\|Hg17\|chr19 (4790550-4790168)
	406-830, gnl\|Mm7\|chr17 (54438324-54437966)

	870-1201, gnl\|bosTau2\|chr7 (14803791-14804124)
	870-1201, gnl\|Hg17\|chr19 (4790076-4789411)

	jej (0.395687)
	fty (0.17584)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	hyp (0.142837)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	med (0.116252)
	eje (0.0988338)