Non-Coding RNA Search

Ss1.1-Pig4-TMW8047I11.3

Sequence:


               
               AAGCCTGGAATGATAGCTTTAGTAAGAGAAGGAAAAGAAAGAAAAAAAGCACCCTCTCCT
CATCCCAATTGTAACAAGGCTGTGACTTCATCAGGAGGTGACAGGCACCGTGTTGAAGCC
CCAGTGGTTGGTTGGTTCCAGTATTAGAGCCCAAACTGAAGCTTGGAGTATGTTTGATGT
ATTATACATGGCCTATAAAAACTCTTCTCTGTCTCTGTTATGTGTCACCCCCCCACTTCT
GGGTCTTTTGGAGGGGGAGGTCATTTTTGTTCTTAACCTGTCCTCTTGTATTCTGGGCCT
TCCTTGTGCCCTCTTCTCCCTAACTTGACTGTTTCAGTTTTACCACGATTCACATTCCAG
TAGGTAAATTCATTGTGCGTTTCACATGCCTTGTGGCATCCAAATTCTAAACAACAGGAT
AAACATCCCCCTTCCCCCTTTTCCAAAATGAGCCCACACAGATGTCCATGTATAATAAAG
CCTCACATACCCGGAGCTACAGGCATCAATAAGGTTGTAATTCCAACTGGTGACAAAGCC
CATGTGCGGGGTAAGAGTGTCTCATTTAGTAACGACATCAGAACCTCTTTGTGAAATTGC
AGCCTGTGTCATGTACATTTTTAAAGGGTGCGTTAGTCAGTATTGTACAGGGGTCTTGTA
AAGTCATCACAACTTGCTATGAACGCTAATTGCCATTTGAAGCTACTGGATAACAGTGGC
TCTGCTCTAAACCACTTTTAGCAATTGTATTTTTTTCCTGATTATATTTTTAATGTACTT
TGATGTTTATGCTGATGAGTTTTTTATGTACTTTTGGTGATGTTTCAGTCTTATGTACTC
TTCTGACGTCAGGAAAGTACCACTGGTTGTTTGCAGTCTTATTGTGTAATCAGCCTACCA
CAGGCTTCCATGTATAATAAAGTAATTAATATTGTGCAAGTGTAAAACACTTCTGTTATG
AAAGCAGTGTTTGAAAATGAGAAATTATTAAAAATGGTTACAAAATACTAGTTAATTTCC
TTTCCCCACTTTTCCTCCCTTAAGTCTGCTTTACCAGCTAAAGGGGTCACTTATTTGTCA
TTTCAAGATGCTTAGAAAATGTATTTAATCCTCTTAAATACACTTAATACTAAAAAAGTC
TGTATTTCTTATTTTGGTAAGTGTGGTGAGTTCCATTGGGTACAGAGTACAAGCTGTAAT
CAAAGGATGGAGAGGACCTTGACCACTGTACCTCCTGAGCTGTATGATTTTTCTCCAGTG
TTTTTGTTTTATACAGCTTTTGAATTTCTTTAACTTTTCTTGTGTGTACTGAATACTGCA
TATGTACTATTCTGATTGTTTGCTCTAGTTTACTACCAATAAAAGACCTGTTAATCACAA
AATCGAAGAAAGGAGATATCACTTAATATCCAGTCACACTTTTCGGATTTTTCTGTTAAC
TCCATAAAATATTCATGGCAGTGGTATAACCAGCCTGCAGTTGAGAGACTGAAATTTGTG
TGTGCACGCGCATTTTTTTTTTTTAAACTTAAGTGTTTCCTGTTTCTAGGTTTATGTTAT
TTGAAAATTGGTTGACTATTTTCTGCAGTTTGAGGCGTACTATATAAGAAGACTAGAAAT
TTAATATTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCTGGAATGATAGCTTTAGTAAGAGAAGGAAAAGAAAGAAAAAAAGCACCCTCTCCT
CATCCCAATTGTAACAAGGCTGTGACTTCATCAGGAGGTGACAGGCACCGTGTTGAAGCC
CCAGTGGTTGGTTGGTTCCAGTATTAGAGCCCAAACTGAAGCTTGGAGTATGTTTGATGT
ATTATACATGGCCTATAAAAACTCTTCTCTGTCTCTGTTATGTGTCACCCCCCCACTTCT
GGGTCTTTTGGAGGGGGAGGTCATTTTTGTTCTTAACCTGTCCTCTTGTATTCTGGGCCT
TCCTTGTGCCCTCTTCTCCCTAACTTGACTGTTTCAGTTTTACCACGATTCACATTCCAG
TAGGTAAATTCATTGTGCGTTTCACATGCCTTGTGGCATCCAAATTCTAAACAACAGGAT
AAACATCCCCCTTCCCCCTTTTCCAAAATGAGCCCACACAGATGTCCATGTATAATAAAG
CCTCACATACCCGGAGCTACAGGCATCAATAAGGTTGTAATTCCAACTGGTGACAAAGCC
CATGTGCGGGGTAAGAGTGTCTCATTTAGTAACGACATCAGAACCTCTTTGTGAAATTGC
AGCCTGTGTCATGTACATTTTTAAAGGGTGCGTTAGTCAGTATTGTACAGGGGTCTTGTA
AAGTCATCACAACTTGCTATGAACGCTAATTGCCATTTGAAGCTACTGGATAACAGTGGC
TCTGCTCTAAACCACTTTTAGCAATTGTATTTTTTTCCTGATTATATTTTTAATGTACTT
TGATGTTTATGCTGATGAGTTTTTTATGTACTTTTGGTGATGTTTCAGTCTTATGTACTC
TTCTGACGTCAGGAAAGTACCACTGGTTGTTTGCAGTCTTATTGTGTAATCAGCCTACCA
CAGGCTTCCATGTATAATAAAGTAATTAATATTGTGCAAGTGTAAAACACTTCTGTTATG
AAAGCAGTGTTTGAAAATGAGAAATTATTAAAAATGGTTACAAAATACTAGTTAATTTCC
TTTCCCCACTTTTCCTCCCTTAAGTCTGCTTTACCAGCTAAAGGGGTCACTTATTTGTCA
TTTCAAGATGCTTAGAAAATGTATTTAATCCTCTTAAATACACTTAATACTAAAAAAGTC
TGTATTTCTTATTTTGGTAAGTGTGGTGAGTTCCATTGGGTACAGAGTACAAGCTGTAAT
CAAAGGATGGAGAGGACCTTGACCACTGTACCTCCTGAGCTGTATGATTTTTCTCCAGTG
TTTTTGTTTTATACAGCTTTTGAATTTCTTTAACTTTTCTTGTGTGTACTGAATACTGCA
TATGTACTATTCTGATTGTTTGCTCTAGTTTACTACCAATAAAAGACCTGTTAATCACAA
AATCGAAGAAAGGAGATATCACTTAATATCCAGTCACACTTTTCGGATTTTTCTGTTAAC
TCCATAAAATATTCATGGCAGTGGTATAACCAGCCTGCAGTTGAGAGACTGAAATTTGTG
TGTGCACGCGCATTTTTTTTTTTTAAACTTAAGTGTTTCCTGTTTCTAGGTTTATGTTAT
TTGAAAATTGGTTGACTATTTTCTGCAGTTTGAGGCGTACTATATAAGAAGACTAGAAAT
TTAATATTGTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               776-895, - strand, RNAz p=0.993325
               

               
               1217-1333, + strand, RNAz p=0.670367

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               776-895, - strand, RNAz p=0.993325
               

               
               1217-1333, + strand, RNAz p=0.670367

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1599, gnl|bosTau2|chr16 (56296930-56298518)
               

               
               1-1599, gnl|Hg17|chr1 (197107106-197105090)
               

               
               1-1599, gnl|Mm7|chr1 (136516787-136518302)
               


               
               1098-1379, gnl|bosTau2|chr15 (41634819-41635094)
               

               
               1098-1379, gnl|Hg17|chr1 (197105999-197105737)
               

               
               1098-1379, gnl|Mm7|chr1 (136517859-136518133)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1599, gnl|bosTau2|chr16 (56296930-56298518)
               

               
               1-1599, gnl|Hg17|chr1 (197107106-197105090)
               

               
               1-1599, gnl|Mm7|chr1 (136516787-136518302)
               


               
               1098-1379, gnl|bosTau2|chr15 (41634819-41635094)
               

               
               1098-1379, gnl|Hg17|chr1 (197105999-197105737)
               

               
               1098-1379, gnl|Mm7|chr1 (136517859-136518133)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               nms (0.427716)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)

	776-895, - strand, RNAz p=0.993325
	1217-1333, + strand, RNAz p=0.670367

	1-1599, gnl\|bosTau2\|chr16 (56296930-56298518)
	1-1599, gnl\|Hg17\|chr1 (197107106-197105090)
	1-1599, gnl\|Mm7\|chr1 (136516787-136518302)

	1098-1379, gnl\|bosTau2\|chr15 (41634819-41635094)
	1098-1379, gnl\|Hg17\|chr1 (197105999-197105737)
	1098-1379, gnl\|Mm7\|chr1 (136517859-136518133)

	nms (0.427716)
	spl (0.286369)
	ova (0.258264)
	cbe (0.239234)
	tes (0.207814)
	sag (0.182715)
	gul (0.177588)
	sin (0.174948)
	eye (0.170503)
	liv (0.146284)
	thg (0.126791)
	clu (0.119646)
	ecc (0.115035)