Ss1.1-Pig4-TMW8047I13.3
|
ATGATGATGATGAAGAAAACTTGGAGGATCGGACTCCTGGCCTCGCTAAAAAGGGAGTGA
GAGCTTCTCTGTCTGACTTGTCAAGCCTTGACGATGTGGAAGCGATGAGCGTGCGCCAGC
TGAAGGAAATCCTGGCTCGGAATTTTGTCAACTACTCTGGCTGTTGTGAAAAGTGGGAGC
TAGTAGAGAAAGTAAACCGATTATACAAGGAGAATGAAGAAAACCAAAAGTCATATGGCG
AGCGGCTGCAGCTGCAGGATGAGGAAGACGATAGCCTGTGTCGGATCTGCATGGACGCTG
TCATCGACTGCGTCCTACTCGAGTGCGGACACATGGTCACCTGCACCAAGTGTGGCAAGC
GCATGAGCGAGTGCCCCATCTGCCGCCAGTACGTGGTGCGTGCTGTGCACGTGTTCAAGT
CCTGAGGCTGGGCCCCCCCAACCCCTGCGGACGCTCGCCCCCCCACCCCCAGTCTTGGGG
CCCAGATGTCCCAGTGCACTGTAGGGACTGGGGACTCCCTGTTGAAGAGCCGGAGCTATA
TTAGAAAACTATTTTCACTACTAACGGTGGAATGGAAAAACTCATCCTAAGTTGTGGCAA
CACTGGTCCAGGCCATGGGCCAGTCAGCCTCAGGACATGCTGCTTCCAGGTCCTGCCAGG
CTTCTCTCATTACTAAATGCTGACGTCAGACTGCTTATGGCATCAGCTCCTGCTCCCTTT
GTAGGACACTTCTCCTGTTCTTATTTCTCCTTCATCCTATTTTTAACTGAATCTACTCAG
ATGTTGGAAAATTCTGTTCTCTAGAGGAGATCACTGTCTGCAAGCTGCCGACATGGTACA
CATCGGGCAGTGGTACTTCTGAATGTTCCTGTTATTAGTTGTGTGTATTTTCAGTGCTAC
TATTTGATGAATGTAAGTTTCCACATTGTTGCTCTTTCTGCCATTAAACCTAATTGGGAA
CCACTAACATTCTCTAGTCAACTGCCAGGGCCTTAGATTAAACATGTCCATTTTTGTTCA
GGTACAGCTTTTTATAGCAAGGGCTGCATCTAGTGTCTTTCATTAGAGAAGTGTGTGTGT
TAAATTGTTTATTCATAAGTAATCAGTTTACACCGTTTTGTATAGTGAAAGTGTATTTTC
AGTGCTACCTGCTAGCTAATTTAAACTTTAGAAATAAAATTAGATTTTCAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGATGATGATGAAGAAAACTTGGAGGATCGGACTCCTGGCCTCGCTAAAAAGGGAGTGA
GAGCTTCTCTGTCTGACTTGTCAAGCCTTGACGATGTGGAAGCGATGAGCGTGCGCCAGC
TGAAGGAAATCCTGGCTCGGAATTTTGTCAACTACTCTGGCTGTTGTGAAAAGTGGGAGC
TAGTAGAGAAAGTAAACCGATTATACAAGGAGAATGAAGAAAACCAAAAGTCATATGGCG
AGCGGCTGCAGCTGCAGGATGAGGAAGACGATAGCCTGTGTCGGATCTGCATGGACGCTG
TCATCGACTGCGTCCTACTCGAGTGCGGACACATGGTCACCTGCACCAAGTGTGGCAAGC
GCATGAGCGAGTGCCCCATCTGCCGCCAGTACGTGGTGCGTGCTGTGCACGTGTTCAAGT
CCTGAGGCTGGGCCCCCCCAACCCCTGCGGACGCTCGCCCCCCCACCCCCAGTCTTGGGG
CCCAGATGTCCCAGTGCACTGTAGGGACTGGGGACTCCCTGTTGAAGAGCCGGAGCTATA
TTAGAAAACTATTTTCACTACTAACGGTGGAATGGAAAAACTCATCCTAAGTTGTGGCAA
CACTGGTCCAGGCCATGGGCCAGTCAGCCTCAGGACATGCTGCTTCCAGGTCCTGCCAGG
CTTCTCTCATTACTAAATGCTGACGTCAGACTGCTTATGGCATCAGCTCCTGCTCCCTTT
GTAGGACACTTCTCCTGTTCTTATTTCTCCTTCATCCTATTTTTAACTGAATCTACTCAG
ATGTTGGAAAATTCTGTTCTCTAGAGGAGATCACTGTCTGCAAGCTGCCGACATGGTACA
CATCGGGCAGTGGTACTTCTGAATGTTCCTGTTATTAGTTGTGTGTATTTTCAGTGCTAC
TATTTGATGAATGTAAGTTTCCACATTGTTGCTCTTTCTGCCATTAAACCTAATTGGGAA
CCACTAACATTCTCTAGTCAACTGCCAGGGCCTTAGATTAAACATGTCCATTTTTGTTCA
GGTACAGCTTTTTATAGCAAGGGCTGCATCTAGTGTCTTTCATTAGAGAAGTGTGTGTGT
TAAATTGTTTATTCATAAGTAATCAGTTTACACCGTTTTGTATAGTGAAAGTGTATTTTC
AGTGCTACCTGCTAGCTAATTTAAACTTTAGAAATAAAATTAGATTTTCAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
29-234, gnl|bosTau2|chr17 (28426845-28427050) |
|
29-234, gnl|canFam2|chr24 (19791960-19791797) |
|
29-234, gnl|dasNov1|scaffold_263024 (1094-924) |
|
29-234, gnl|echTel1|scaffold_282888 (14329-14469) |
|
29-234, gnl|Hg17|chr12 (120321096-120321301) |
|
29-234, gnl|hg17|chr20 (4677575-4677740) |
|
29-234, gnl|loxAfr1|scaffold_6014 (60230-60407) |
|
29-234, gnl|mm7|chr2 (131721784-131721944) |
|
29-234, gnl|Mm7|chr5 (122101338-122101543) |
|
29-234, gnl|oryCun1|scaffold_114411 (6458-6300) |
|
29-234, gnl|panTro1|chr21 (4645512-4645677) |
|
29-234, gnl|rheMac2|chr10 (38085776-38085938) |
|
29-234, gnl|rn3|chr3 (119625820-119625980) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
29-234, gnl|bosTau2|chr17 (28426845-28427050) |
|
29-234, gnl|canFam2|chr24 (19791960-19791797) |
|
29-234, gnl|dasNov1|scaffold_263024 (1094-924) |
|
29-234, gnl|echTel1|scaffold_282888 (14329-14469) |
|
29-234, gnl|Hg17|chr12 (120321096-120321301) |
|
29-234, gnl|hg17|chr20 (4677575-4677740) |
|
29-234, gnl|loxAfr1|scaffold_6014 (60230-60407) |
|
29-234, gnl|mm7|chr2 (131721784-131721944) |
|
29-234, gnl|Mm7|chr5 (122101338-122101543) |
|
29-234, gnl|oryCun1|scaffold_114411 (6458-6300) |
|
29-234, gnl|panTro1|chr21 (4645512-4645677) |
|
29-234, gnl|rheMac2|chr10 (38085776-38085938) |
|
29-234, gnl|rn3|chr3 (119625820-119625980) |
|
sme (0.610874) |
|
fbs (0.350693) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
ste (0.270416) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
hea (0.204499) |
|
ldo (0.194005) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
fco (0.157208) |
|
isp (0.150376) |
|
ssp (0.13552) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
sme (0.610874) |
|
fbs (0.350693) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
ste (0.270416) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
hea (0.204499) |
|
ldo (0.194005) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
fco (0.157208) |
|
isp (0.150376) |
|
ssp (0.13552) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
eje (0.0988338) |
