Ss1.1-Pig4-TMW8047I15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGAGATGGTCAGATGAATGACTTGTCATACTTGAGCCAGTGACATGGTTGAAGTGAAT AAAATTGCTCATGTTTAGCGACTAAATGTGAAATAAAGAATGTGCCACATTCATATCCTT GATCATCTTTTAGAAGTGATCCCAGAAGTTGGGGAAATGAGTAGTGACAGAAATTATCCT CATTCTTCAGTGACTGCTTCTGACTTTTGTTTCTTTTTTCAATAGTGTCTCTGGAGAATG GTTCGACTACTCCCTGATACCATCAACAGCATTAATCTGGACAGAATTCTTCTGGATATA CACATTTTCATGAAGGTCTTCCCCAAAGAGAAACTAAAGCAATGCAAGAGTGAATTTCCC ATAAGGACCCTAAAAACACTGCTGCACACGTTATGCAAATTAAAGGGGCCCAAGATCCTA GACCACCTAACGATGATCGACAACAAGAACGAGTCGGAGCTGGAGGCCCACCTCTGCCGG ATGATGAAGCACAGTATGGACCAGACCGGGAGCAAGTCTGATAAGGAAACGGAAAAGGGA GCATCTCGAATCGATGAAAAATCATCAAAGGCTAAGGTGAATGATTTCTTAGCTGAGATT TTTAAGAAGATTGGCTCTAAAGAGAACACTAAAGAGGGCCTGGCCGAATTATACGAATAT AAGAAGAAATATTCAGATGCTGACATTGAACCATTTCTGAAAAATTCCTCACAGTTCTTC CAGAGCTATGTTGAGAGGGGCCTTCGGGTGATTGAGATGGAGAGAGAGGGCAAAGGCCGT ATTCCCACTTCAACAGGCATCTCCCCTCAGATGGAGGTCACGTGTGTGCCCCCTCCCACA AGCACGGTGTCCTCCATAGGTAACACAAACGGCGAGGAGGTGGGACCATCCGTCTACCTG GAGAGGCTCAAAATCCTCCGACAGCGATGTGGTCTGGACAATACGAAGCAGGATGACCGG CCTCCGCTGACCTCTTTGCTCTCCAAACCAGCAGTTCCTCCCGTTGCCTCCTCCACAGAC ATGCTGCACAGCAAACTCTCTCAGCTCCGGGAGTCACGGGAGCAGCACCAGCACTCAGAC CTGGATTCCAACCAGACTCACCCTTCAGGAACCATGACCACATCCTCCTCCTCCACAGCT AACATCGATGACTTGAAAAAAAGACTGGAGAGAATAAAGAGCAGTCGCAAATGAAGCCGC CCCACTTCCCTGGCCCCTGCCGCTTTAGTTTACTAAACTAGGAGTCCTCATAGGTTAAGC GGCCTTGGCAGGCCTAGTGTACACAAACTGGGTGTATGTATCATACCGTGGACCTGGGGG AGGAGTCGTTGTGGCACAAGCATTTGCACATCTCTGCTTCTCTCCGCCAGCATCCTGCCT CTAGAAGACTGTCTGTGTCTTAGTTTAGTGTACAGACCTGTAAACAGCTGCCCTCCGCTC AGCTCTGACTAGTTTCCATTTCCTTTTTTGTTCTGTTTTTAATTGCTCATTTGTAAAGTT GTCCTAATCTTTCCTAGCTTTTAACTCTTAGAAACTCTTTACTAGTTTTCCTTTGAGTTT GTGAGCTCTTCTTGTAGCCCAGAAGGGTCGCTGTATTCTGTATGAACGCATGGCATGATA CAACTAATTTAAGAGTCTTTTATAAATAAAGTTTGCATTAACTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGAGATGGTCAGATGAATGACTTGTCATACTTGAGCCAGTGACATGGTTGAAGTGAAT AAAATTGCTCATGTTTAGCGACTAAATGTGAAATAAAGAATGTGCCACATTCATATCCTT GATCATCTTTTAGAAGTGATCCCAGAAGTTGGGGAAATGAGTAGTGACAGAAATTATCCT CATTCTTCAGTGACTGCTTCTGACTTTTGTTTCTTTTTTCAATAGTGTCTCTGGAGAATG GTTCGACTACTCCCTGATACCATCAACAGCATTAATCTGGACAGAATTCTTCTGGATATA CACATTTTCATGAAGGTCTTCCCCAAAGAGAAACTAAAGCAATGCAAGAGTGAATTTCCC ATAAGGACCCTAAAAACACTGCTGCACACGTTATGCAAATTAAAGGGGCCCAAGATCCTA GACCACCTAACGATGATCGACAACAAGAACGAGTCGGAGCTGGAGGCCCACCTCTGCCGG ATGATGAAGCACAGTATGGACCAGACCGGGAGCAAGTCTGATAAGGAAACGGAAAAGGGA GCATCTCGAATCGATGAAAAATCATCAAAGGCTAAGGTGAATGATTTCTTAGCTGAGATT TTTAAGAAGATTGGCTCTAAAGAGAACACTAAAGAGGGCCTGGCCGAATTATACGAATAT AAGAAGAAATATTCAGATGCTGACATTGAACCATTTCTGAAAAATTCCTCACAGTTCTTC CAGAGCTATGTTGAGAGGGGCCTTCGGGTGATTGAGATGGAGAGAGAGGGCAAAGGCCGT ATTCCCACTTCAACAGGCATCTCCCCTCAGATGGAGGTCACGTGTGTGCCCCCTCCCACA AGCACGGTGTCCTCCATAGGTAACACAAACGGCGAGGAGGTGGGACCATCCGTCTACCTG GAGAGGCTCAAAATCCTCCGACAGCGATGTGGTCTGGACAATACGAAGCAGGATGACCGG CCTCCGCTGACCTCTTTGCTCTCCAAACCAGCAGTTCCTCCCGTTGCCTCCTCCACAGAC ATGCTGCACAGCAAACTCTCTCAGCTCCGGGAGTCACGGGAGCAGCACCAGCACTCAGAC CTGGATTCCAACCAGACTCACCCTTCAGGAACCATGACCACATCCTCCTCCTCCACAGCT AACATCGATGACTTGAAAAAAAGACTGGAGAGAATAAAGAGCAGTCGCAAATGAAGCCGC CCCACTTCCCTGGCCCCTGCCGCTTTAGTTTACTAAACTAGGAGTCCTCATAGGTTAAGC GGCCTTGGCAGGCCTAGTGTACACAAACTGGGTGTATGTATCATACCGTGGACCTGGGGG AGGAGTCGTTGTGGCACAAGCATTTGCACATCTCTGCTTCTCTCCGCCAGCATCCTGCCT CTAGAAGACTGTCTGTGTCTTAGTTTAGTGTACAGACCTGTAAACAGCTGCCCTCCGCTC AGCTCTGACTAGTTTCCATTTCCTTTTTTGTTCTGTTTTTAATTGCTCATTTGTAAAGTT GTCCTAATCTTTCCTAGCTTTTAACTCTTAGAAACTCTTTACTAGTTTTCCTTTGAGTTT GTGAGCTCTTCTTGTAGCCCAGAAGGGTCGCTGTATTCTGTATGAACGCATGGCATGATA CAACTAATTTAAGAGTCTTTTATAAATAAAGTTTGCATTAACTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 8-125, + strand, RNAz p=0.996363 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 8-125, + strand, RNAz p=0.996363 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 8-414, gnl|bosTau2|chr15 (48501407-48501006) | |
| 8-414, gnl|Hg17|chr11 (46729876-46729472) | |
| 635-806, gnl|bosTau2|chr15 (48500208-48500035) | |
| 635-806, gnl|canFam2|chr18 (45809678-45809485) | |
| 635-806, gnl|danRer3|chrNA (106175471-106175658) | |
| 635-806, gnl|dasNov1|scaffold_46832 (296-486) | |
| 635-806, gnl|echTel1|scaffold_85113 (1769-1576) | |
| 635-806, gnl|fr1|chrUn (231589943-231590120) | |
| 635-806, gnl|galGal2|chr5 (20719527-20719350) | |
| 635-806, gnl|hg17|chr11 (46728389-46728582) | |
| 635-806, gnl|Hg17|chr11 (46728561-46728388) | |
| 635-806, gnl|loxAfr1|scaffold_64281 (828-1021) | |
| 635-806, gnl|mm7|chr2 (91467189-91466985) | |
| 635-806, gnl|Mm7|chr2 (91467015-91467188) | |
| 635-806, gnl|monDom2|scaffold_33 (12705612-12705800) | |
| 635-806, gnl|oryCun1|scaffold_210921 (10290-10097) | |
| 635-806, gnl|panTro1|chr9 (47249309-47249502) | |
| 635-806, gnl|rn3|chr3 (75894931-75894743) | |
| 635-806, gnl|tetNig1|chrUn_random (108174297-108174122) | |
| 635-806, gnl|xenTro1|scaffold_76 (2228448-2228623) | |
| 947-1667, gnl|bosTau2|chr15 (48496946-48496230) | |
| 947-1667, gnl|Hg17|chr11 (46722393-46721665) | |
| 947-1667, gnl|Mm7|chr2 (91470696-91471382) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-414, gnl|bosTau2|chr15 (48501407-48501006) | |
| 8-414, gnl|Hg17|chr11 (46729876-46729472) | |
| 635-806, gnl|bosTau2|chr15 (48500208-48500035) | |
| 635-806, gnl|canFam2|chr18 (45809678-45809485) | |
| 635-806, gnl|danRer3|chrNA (106175471-106175658) | |
| 635-806, gnl|dasNov1|scaffold_46832 (296-486) | |
| 635-806, gnl|echTel1|scaffold_85113 (1769-1576) | |
| 635-806, gnl|fr1|chrUn (231589943-231590120) | |
| 635-806, gnl|galGal2|chr5 (20719527-20719350) | |
| 635-806, gnl|hg17|chr11 (46728389-46728582) | |
| 635-806, gnl|Hg17|chr11 (46728561-46728388) | |
| 635-806, gnl|loxAfr1|scaffold_64281 (828-1021) | |
| 635-806, gnl|mm7|chr2 (91467189-91466985) | |
| 635-806, gnl|Mm7|chr2 (91467015-91467188) | |
| 635-806, gnl|monDom2|scaffold_33 (12705612-12705800) | |
| 635-806, gnl|oryCun1|scaffold_210921 (10290-10097) | |
| 635-806, gnl|panTro1|chr9 (47249309-47249502) | |
| 635-806, gnl|rn3|chr3 (75894931-75894743) | |
| 635-806, gnl|tetNig1|chrUn_random (108174297-108174122) | |
| 635-806, gnl|xenTro1|scaffold_76 (2228448-2228623) | |
| 947-1667, gnl|bosTau2|chr15 (48496946-48496230) | |
| 947-1667, gnl|Hg17|chr11 (46722393-46721665) | |
| 947-1667, gnl|Mm7|chr2 (91470696-91471382) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cbr (0.767853) | |
| ece (0.45861) | |
| thg (0.253582) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| nbm (0.198649) | |
| sag (0.182715) | |
| ton (0.1755) | |
| eye (0.170503) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| sug (0.127291) | |
| bla (0.124347) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.767853) | |
| ece (0.45861) | |
| thg (0.253582) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| nbm (0.198649) | |
| sag (0.182715) | |
| ton (0.1755) | |
| eye (0.170503) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| sug (0.127291) | |
| bla (0.124347) | |
| med (0.116252) | |
| spc (0.113366) |