Ss1.1-Pig4-TMW8047I16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCATCGAAGCGAACACCTCAGAAAAATGGTGCCTTCTGGAAGAAAACATACCGGGAA ATCTGGAAAGCCATCCATGGAGGATCAGGTGATAAGACCCTATGACTTTGAGAAAGAAGA AAAAAAAGATCTGAGTGGTTCAGAGGAGGATGTCATTGAAGGGAAGACTCCAATACTTGA TAAGCATGGGAAAAAAAGGACTTCTACAGGAATAGTTGAAGATTTGGGGGGTGAAGTACA GAATATGCTGGAAAGATTTGGAGCTGATATTAACAAGGCTCTTCTTGCCAAGAGAAAAAA ACTAGAAATGTACACCAAGGCTTCTCTCAAAACCAGTAACCAGAAAATTGAAAATGTTTG GAAAACCCAGCAAGAGCAAAGGCAGAAGCTTAACCAGGAGTATTCTCAGCAGTTTCTGAC TTTGTTTCAGCAGTGGGATATAGATGTGCAGAAAGCTGAAGAACAAGAAGAAAAACTAGC TAATATGTTTCGCCAGCAACAAAAAGTTTTTCAACAGTCTAGAATTGTTCAGAGCCAGAG ACTGAAAACAATCCGACAGTTATATGAGCAGTTCATAAAGAGTATGGAGGACTTAGAGAA GAATCATGATAATCTACTTACTGGTGCACAGAATGAACTTAGAAAAGAAATGGCTATGTT GCAAAAAAAAATTATGATGGAAACTCAGCAGCAAGAGATGGCAAGTGTTCGAAAGTCTCT TCAATCCATGTTATTCTGATGACTCTTTGAAGGAAGAACTTGAACCTAAGTAATATGATA CAATTATAACATTAGCTAGGAGGCATGTCAGTCTTCAGCATGGTTTAAAATTTCAGTTTA AAATATTACATTGTATTGATCATTAGCTAAATAAGTACATGACCTCTCTTTTTGTTAATC TCCAAATAAAATATGAAGTTAGGTGAGTAGGAGCAATTCCTAAATTACATGTACCACCAA TCTTCCAACTCTTTAATAGTGCATTGTTCTAATACTTGTCACTTAACTTACAGCAATAAA GATGATTTAATTTCAAGTTTTGGCTTCAGAGTATTGGTATCACTTCCAAAAGGTAGAAAG CACAAGTATACAGATGGTTAATGTTACTCTTCTCTAAGAAAAAAATACCAAATCTATTTT ATATGTACATCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCATCGAAGCGAACACCTCAGAAAAATGGTGCCTTCTGGAAGAAAACATACCGGGAA ATCTGGAAAGCCATCCATGGAGGATCAGGTGATAAGACCCTATGACTTTGAGAAAGAAGA AAAAAAAGATCTGAGTGGTTCAGAGGAGGATGTCATTGAAGGGAAGACTCCAATACTTGA TAAGCATGGGAAAAAAAGGACTTCTACAGGAATAGTTGAAGATTTGGGGGGTGAAGTACA GAATATGCTGGAAAGATTTGGAGCTGATATTAACAAGGCTCTTCTTGCCAAGAGAAAAAA ACTAGAAATGTACACCAAGGCTTCTCTCAAAACCAGTAACCAGAAAATTGAAAATGTTTG GAAAACCCAGCAAGAGCAAAGGCAGAAGCTTAACCAGGAGTATTCTCAGCAGTTTCTGAC TTTGTTTCAGCAGTGGGATATAGATGTGCAGAAAGCTGAAGAACAAGAAGAAAAACTAGC TAATATGTTTCGCCAGCAACAAAAAGTTTTTCAACAGTCTAGAATTGTTCAGAGCCAGAG ACTGAAAACAATCCGACAGTTATATGAGCAGTTCATAAAGAGTATGGAGGACTTAGAGAA GAATCATGATAATCTACTTACTGGTGCACAGAATGAACTTAGAAAAGAAATGGCTATGTT GCAAAAAAAAATTATGATGGAAACTCAGCAGCAAGAGATGGCAAGTGTTCGAAAGTCTCT TCAATCCATGTTATTCTGATGACTCTTTGAAGGAAGAACTTGAACCTAAGTAATATGATA CAATTATAACATTAGCTAGGAGGCATGTCAGTCTTCAGCATGGTTTAAAATTTCAGTTTA AAATATTACATTGTATTGATCATTAGCTAAATAAGTACATGACCTCTCTTTTTGTTAATC TCCAAATAAAATATGAAGTTAGGTGAGTAGGAGCAATTCCTAAATTACATGTACCACCAA TCTTCCAACTCTTTAATAGTGCATTGTTCTAATACTTGTCACTTAACTTACAGCAATAAA GATGATTTAATTTCAAGTTTTGGCTTCAGAGTATTGGTATCACTTCCAAAAGGTAGAAAG CACAAGTATACAGATGGTTAATGTTACTCTTCTCTAAGAAAAAAATACCAAATCTATTTT ATATGTACATCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 24-162, gnl|bosTau2|chr5 (39892371-39892509) | |
| 24-162, gnl|Hg17|chr12 (100634186-100634048) | |
| 24-162, gnl|Mm7|chr10 (88020329-88020464) | |
| 262-382, gnl|bosTau2|chr5 (39895293-39895413) | |
| 262-382, gnl|canFam2|chr15 (43647563-43647699) | |
| 262-382, gnl|canFam2|chrX (124079406-124079206) | |
| 262-382, gnl|danRer3|chr25 (11187042-11187167) | |
| 262-382, gnl|dasNov1|scaffold_13861 (41963-42166) | |
| 262-382, gnl|dasNov1|scaffold_8262 (25573-25710) | |
| 262-382, gnl|echTel1|scaffold_278821 (41824-41621) | |
| 262-382, gnl|echTel1|scaffold_308593 (54575-54712) | |
| 262-382, gnl|galGal2|chr1 (52264001-52263864) | |
| 262-382, gnl|hg17|chr12 (100631158-100631295) | |
| 262-382, gnl|Hg17|chr12 (100631292-100631172) | |
| 262-382, gnl|hg17|chrX (8573999-8574199) | |
| 262-382, gnl|loxAfr1|scaffold_1180 (59518-59381) | |
| 262-382, gnl|loxAfr1|scaffold_1180 (59549-59348) | |
| 262-382, gnl|mm7|chr10 (88024425-88024296) | |
| 262-382, gnl|Mm7|chr10 (88024297-88024417) | |
| 262-382, gnl|mm7|chrX (63093062-63092859) | |
| 262-382, gnl|monDom2|scaffold_34 (11623375-11623234) | |
| 262-382, gnl|oryCun1|scaffold_183194 (50956-51159) | |
| 262-382, gnl|oryCun1|scaffold_203776 (258258-258394) | |
| 262-382, gnl|panTro1|chr10 (103092258-103092395) | |
| 262-382, gnl|panTro1|chrX (11323510-11323310) | |
| 262-382, gnl|rheMac2|chr11 (102928645-102928780) | |
| 262-382, gnl|rheMac2|chrX (6394690-6394890) | |
| 262-382, gnl|rn3|chr7 (25185044-25184915) | |
| 262-382, gnl|rn3|chr7 (25185074-25184881) | |
| 262-382, gnl|xenTro1|scaffold_5773 (718-580) | |
| 677-994, gnl|bosTau2|chr5 (39898221-39898511) | |
| 677-994, gnl|Hg17|chr12 (100625235-100624948) | |
| 677-994, gnl|Mm7|chr10 (88030756-88031041) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-162, gnl|bosTau2|chr5 (39892371-39892509) | |
| 24-162, gnl|Hg17|chr12 (100634186-100634048) | |
| 24-162, gnl|Mm7|chr10 (88020329-88020464) | |
| 262-382, gnl|bosTau2|chr5 (39895293-39895413) | |
| 262-382, gnl|canFam2|chr15 (43647563-43647699) | |
| 262-382, gnl|canFam2|chrX (124079406-124079206) | |
| 262-382, gnl|danRer3|chr25 (11187042-11187167) | |
| 262-382, gnl|dasNov1|scaffold_13861 (41963-42166) | |
| 262-382, gnl|dasNov1|scaffold_8262 (25573-25710) | |
| 262-382, gnl|echTel1|scaffold_278821 (41824-41621) | |
| 262-382, gnl|echTel1|scaffold_308593 (54575-54712) | |
| 262-382, gnl|galGal2|chr1 (52264001-52263864) | |
| 262-382, gnl|hg17|chr12 (100631158-100631295) | |
| 262-382, gnl|Hg17|chr12 (100631292-100631172) | |
| 262-382, gnl|hg17|chrX (8573999-8574199) | |
| 262-382, gnl|loxAfr1|scaffold_1180 (59518-59381) | |
| 262-382, gnl|loxAfr1|scaffold_1180 (59549-59348) | |
| 262-382, gnl|mm7|chr10 (88024425-88024296) | |
| 262-382, gnl|Mm7|chr10 (88024297-88024417) | |
| 262-382, gnl|mm7|chrX (63093062-63092859) | |
| 262-382, gnl|monDom2|scaffold_34 (11623375-11623234) | |
| 262-382, gnl|oryCun1|scaffold_183194 (50956-51159) | |
| 262-382, gnl|oryCun1|scaffold_203776 (258258-258394) | |
| 262-382, gnl|panTro1|chr10 (103092258-103092395) | |
| 262-382, gnl|panTro1|chrX (11323510-11323310) | |
| 262-382, gnl|rheMac2|chr11 (102928645-102928780) | |
| 262-382, gnl|rheMac2|chrX (6394690-6394890) | |
| 262-382, gnl|rn3|chr7 (25185044-25184915) | |
| 262-382, gnl|rn3|chr7 (25185074-25184881) | |
| 262-382, gnl|xenTro1|scaffold_5773 (718-580) | |
| 677-994, gnl|bosTau2|chr5 (39898221-39898511) | |
| 677-994, gnl|Hg17|chr12 (100625235-100624948) | |
| 677-994, gnl|Mm7|chr10 (88030756-88031041) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| tes (0.831255) | |
| sme (0.305437) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| isp (0.150376) | |
| ese (0.126502) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.831255) | |
| sme (0.305437) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| isp (0.150376) | |
| ese (0.126502) |