Non-Coding RNA Search

Ss1.1-Pig4-TMW8047I20.3

Sequence:


               
               CAGGTTCGAGCAGAGGCTACTACAAGAAGTAGGGAATCCAGTCCCTCACATGGGTTATTA
AAACTAGGTAGTGGTGGAGTAGTGAAAAAGAAATCTGAGCAACTTCATAATGTAACTGCC
TTTCAGGGGAAAGGGCATTCTCTAGGAACTGCATCCACTGCCCCACACCTTGATCCAAGA
GCTAGGGAAACTCCGGTTGGAAGGAAGCATACTGCAGGGACAGACTTTAGCAATAGTTCC
ATTAAAACAGAGCCTTCTGTATTCACAGCTTCTCCTAGTAACAGTGAGCTTATTCGAATA
GCTCCTGGAGTAGTTACAATGAGAGACAGCAGGCAGCTTGATCCTGATATGGTTGAGGCC
CAGCGAAAAAAATTGCAGGAAATGGTTTCTTCTATACAGGCATCAATGGACAAACACTTG
CGGGATCAAAGTACAGAGCAGTCACCATCTGATCTTCCTCAAAGGAAAGTAGAAGTTGTG
AGTTCCTCTCTGAAGTCTGGGAATCTTCAGACTGGCTTACCTGAGTCTTTTTCTCTGACT
GGTGGCACTGAAAATTTGAATACGGATACAGCTGAGAGCTGTGTGGCAGAGGCACTGGGA
GCAGAATTTGCCACAAGGTCAAAAGCACAAAAGGGAAATTCCGTGGAGGAGCCTGAAGAG
ATGGATAGTCAAGATGCTGAGATGACAAACACAGCTGAGCCAATGGATCACTCTTGATTT
AATTAGAGGCTAATAAAGGCAGAATGTTTATTGTGAATATGTAATATTTGTTGGCTGGGC
CACATAACTTGATTAGTCATTAAAAATCTTGTACGTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTTCGAGCAGAGGCTACTACAAGAAGTAGGGAATCCAGTCCCTCACATGGGTTATTA
AAACTAGGTAGTGGTGGAGTAGTGAAAAAGAAATCTGAGCAACTTCATAATGTAACTGCC
TTTCAGGGGAAAGGGCATTCTCTAGGAACTGCATCCACTGCCCCACACCTTGATCCAAGA
GCTAGGGAAACTCCGGTTGGAAGGAAGCATACTGCAGGGACAGACTTTAGCAATAGTTCC
ATTAAAACAGAGCCTTCTGTATTCACAGCTTCTCCTAGTAACAGTGAGCTTATTCGAATA
GCTCCTGGAGTAGTTACAATGAGAGACAGCAGGCAGCTTGATCCTGATATGGTTGAGGCC
CAGCGAAAAAAATTGCAGGAAATGGTTTCTTCTATACAGGCATCAATGGACAAACACTTG
CGGGATCAAAGTACAGAGCAGTCACCATCTGATCTTCCTCAAAGGAAAGTAGAAGTTGTG
AGTTCCTCTCTGAAGTCTGGGAATCTTCAGACTGGCTTACCTGAGTCTTTTTCTCTGACT
GGTGGCACTGAAAATTTGAATACGGATACAGCTGAGAGCTGTGTGGCAGAGGCACTGGGA
GCAGAATTTGCCACAAGGTCAAAAGCACAAAAGGGAAATTCCGTGGAGGAGCCTGAAGAG
ATGGATAGTCAAGATGCTGAGATGACAAACACAGCTGAGCCAATGGATCACTCTTGATTT
AATTAGAGGCTAATAAAGGCAGAATGTTTATTGTGAATATGTAATATTTGTTGGCTGGGC
CACATAACTTGATTAGTCATTAAAAATCTTGTACGTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61849202|ref|XP_589239.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61849202|ref|XP_589239.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-822, gnl|bosTau2|chr14 (19063601-19064423)
               

               
               1-822, gnl|Hg17|chr8 (67710006-67709185)
               

               
               1-822, gnl|Mm7|chr1 (9867922-9867103)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-822, gnl|bosTau2|chr14 (19063601-19064423)
               

               
               1-822, gnl|Hg17|chr8 (67710006-67709185)
               

               
               1-822, gnl|Mm7|chr1 (9867922-9867103)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (2.63466)
               

               
               sto (0.179824)
               

               
               liv (0.146284)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (2.63466)
               

               
               sto (0.179824)
               

               
               liv (0.146284)

	1-822, gnl\|bosTau2\|chr14 (19063601-19064423)
	1-822, gnl\|Hg17\|chr8 (67710006-67709185)
	1-822, gnl\|Mm7\|chr1 (9867922-9867103)